plot_standard_curve_analyte: Standard curves

In SerolyzeR: Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

Standard curves

Description

Plot standard curve samples of a plate of a given analyte.

Usage

plot_standard_curve_analyte(
  plate,
  analyte_name,
  data_type = "Median",
  decreasing_rau_order = TRUE,
  log_scale = c("all"),
  plot_line = TRUE,
  plot_blank_mean = TRUE,
  plot_rau_bounds = TRUE,
  plot_legend = TRUE,
  verbose = TRUE
)

Arguments

plate	A plate object
analyte_name	Name of the analyte of which standard curve we want to plot.
data_type	Data type of the value we want to plot - the same datatype as in the plate file. By default equals to ⁠Net MFI⁠
decreasing_rau_order	If TRUE the RAU values are plotted in decreasing order, TRUE by default
log_scale	Which elements on the plot should be displayed in log scale. By default "RAU". If NULL or c() no log scale is used, if "all" or c("RAU", "MFI") all elements are displayed in log scale.
plot_line	If TRUE a line is plotted, TRUE by default
plot_blank_mean	If TRUE the mean of the blank samples is plotted, TRUE by default
plot_rau_bounds	If TRUE the RAU values bounds are plotted, TRUE by default
plot_legend	If TRUE the legend is plotted, TRUE by default
verbose	If TRUE prints messages, TRUE by default

Value

ggplot object with the plot

Examples

path <- system.file("extdata", "CovidOISExPONTENT.csv",
  package = "SerolyzeR", mustWork = TRUE
)
layout_path <- system.file("extdata", "CovidOISExPONTENT_layout.xlsx",
  package = "SerolyzeR", mustWork = TRUE
)
plate <- read_luminex_data(path, layout_filepath = layout_path, verbose = FALSE)
plot_standard_curve_analyte(plate, "Spike_6P", plot_legend = FALSE, data_type = "Median")

SerolyzeR documentation built on April 12, 2025, 2:11 a.m.