plot_mfi_for_analyte: Plot MFI value distribution for a given analyte

In SerolyzeR: Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

Plot MFI value distribution for a given analyte

Description

Plot MFI value distribution for a given analyte

Usage

plot_mfi_for_analyte(
  plate,
  analyte_name,
  data_type = "Median",
  plot_type = "violin",
  scale_y = "log10",
  plot_outliers = FALSE
)

Arguments

plate	A plate object
analyte_name	The analyte to plot
data_type	The type of data to plot. Default is "Median"
plot_type	The type of plot to generate. Default is "violin". Available options are "boxplot" and "violin".
scale_y	What kind of transformation of the scale to apply. By default MFI is presented in a "log10" scale. Available options are described in the documentation of scale_y_continuous undertransform parameter.
plot_outliers	When using "boxplot" type of a plot one can set this parameter to TRUE and display the names of samples for which MFI falls outside the 1.5 IQR interval

Value

A ggplot object

SerolyzeR documentation built on April 12, 2025, 2:11 a.m.