EXhaps: Example Haplotypes dataset
In SimRVSequences: Simulate Genetic Sequence Data for Pedigrees
Description
Usage
Format
Details
See Also
Description
This data set contains 20,000 haplotypes (i.e. rows) spanning 500 single-nucleotide variants (SNVs). This dataset is intended to accompany the EXmuts dataset; each row of EXmuts describes a column (i.e. SNV) in EXhaps.
Usage
1
Format
A sparseMatrix of class dgCMatrix with 20000 rows and 500 variables. Each row represents an observed haplotype and each column represents an SNV locus.
Details
This dataset is intended to accompany the EXmuts dataset. Together, the EXmuts and EXhaps datasets represent example output of the SNVdata object returned by the read_slim function. The EXhaps data set represents the sparse matrix Haplotypes returned by read_slim, and the EXmuts data set represents the Mutations data frame returned by read_slim. This toy data set, used primarily for demonstration, contains 50 SNVs which were randomly sampled from genes in the apoptosis sub-pathway, and 450 SNVs sampled from outside the pathway.
See Also
SimRVSequences documentation built on July 1, 2020, 6:03 p.m.
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Description Usage Format Details See Also
Description
This data set contains 20,000 haplotypes (i.e. rows) spanning 500 single-nucleotide variants (SNVs). This dataset is intended to accompany the EXmuts dataset; each row of EXmuts describes a column (i.e. SNV) in EXhaps.
Usage
1 |
Format
A sparseMatrix of class dgCMatrix with 20000 rows and 500 variables. Each row represents an observed haplotype and each column represents an SNV locus.
Details
This dataset is intended to accompany the EXmuts dataset. Together, the EXmuts and EXhaps datasets represent example output of the SNVdata object returned by the read_slim function. The EXhaps data set represents the sparse matrix Haplotypes returned by read_slim, and the EXmuts data set represents the Mutations data frame returned by read_slim. This toy data set, used primarily for demonstration, contains 50 SNVs which were randomly sampled from genes in the apoptosis sub-pathway, and 450 SNVs sampled from outside the pathway.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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