sim_FGenos: Draw Founder Genotypes from Haplotype Distribution Given...

In SimRVSequences: Simulate Genetic Sequence Data for Pedigrees

Description

For internal use.

Usage

sim_FGenos(founder_ids, RV_founder, founder_pat_allele, founder_mat_allele,
  haplos, RV_col_loc, RV_pool_loc)

Arguments

founder_ids	Numeric list. The ID numbers of all founders.
RV_founder	Numeric. The ID number(s) of the founder who introduced a cRV.
founder_pat_allele	Numeric list. The paternally inherited allele for each founder.
founder_mat_allele	Numeric list. The maternally inherited allele for each founder.
haplos	sparseMatrix. The sparseMatrix of genomes returned by read_slimOut.
RV_col_loc	Numeric. The column location of the familial RV in haplos.
RV_pool_loc	The column locations of each SNV (in haplos) for SNVs in the pool of cRVs.

Value

list of familial founder genotypes

SimRVSequences documentation built on July 1, 2020, 6:03 p.m.