SpadeR: Species-Richness Prediction and Diversity Estimation with R

Estimation of various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.

Author
Anne Chao, K. H. Ma, T. C. Hsieh and Chun-Huo Chiu
Date of publication
2016-09-06 14:53:57
Maintainer
Anne Chao <chao@stat.nthu.edu.tw>
License
GPL (>= 3)
Version
0.1.1

View on CRAN

Man pages

ChaoShared
Estimation of the number of shared species between two...
ChaoSpecies
Estimation of species richness in a community
DivDemoData
Data for Function Diversity
Diversity
Estimation of species diversity (Hill numbers)
Genetics
Estimation of genetic differentiation measures
GeneticsDataAbu
Human allele frequency data for Function Genetics
MulComSimDemoData
Data for Function SimilarityMult
SharedSpecDemoData
Data for Function ChaoShared
SimilarityMult
Estimation of multiple-community similarity measures
SimilarityPair
Estimation of two-assemblage similarity measures
spader-package
Species-richness prediction and diversity estimation with R
SpecDemoData
Data for Function ChaoSpecies
TwoComSimDemoData
Data for Function SimilarityPair

Files in this package

SpadeR
SpadeR/NAMESPACE
SpadeR/data
SpadeR/data/GeneticsDataAbu.rda
SpadeR/data/SimilarityPairData.rda
SpadeR/data/ChaoSpeciesData.rda
SpadeR/data/DiversityData.rda
SpadeR/data/SimilarityMultData.rda
SpadeR/data/ChaoSharedData.rda
SpadeR/R
SpadeR/R/SpecInciHomo.R
SpadeR/R/HomoFun.R
SpadeR/R/SpecInciChao2.R
SpadeR/R/Chao1_sharedFun.R
SpadeR/R/SpecAbunAce.R
SpadeR/R/VarEstFun.R
SpadeR/R/DataTransform.R
SpadeR/R/basicInci.R
SpadeR/R/SpecInciModelth.R
SpadeR/R/SpecInciOut.R
SpadeR/R/ChaoShared.Ind.R
SpadeR/R/print.ChaoShared.R
SpadeR/R/diff_Pan.R
SpadeR/R/SpecAbunAce1.R
SpadeR/R/SpecAbunHomo.R
SpadeR/R/logCI.R
SpadeR/R/ExtenProbFunMa.R
SpadeR/R/diff_Chao1.R
SpadeR/R/Chao1_bcEstFun.R
SpadeR/R/HeteroFun.R
SpadeR/R/SpeciesAbundance.R
SpadeR/R/spader.R
SpadeR/R/SpecInciiChao2.R
SpadeR/R/SpecAbunJack1.R
SpadeR/R/ChaoShared.Sam.R
SpadeR/R/Chao1_sharedEstFun.R
SpadeR/R/RareSpeciesGroupInprove.R
SpadeR/R/Chao1_bcFun.R
SpadeR/R/diff_Chao2bc.R
SpadeR/R/SpecAbunChao1.R
SpadeR/R/PanbcEstFun.R
SpadeR/R/HomoEstFun.R
SpadeR/R/SpecInciModelh.R
SpadeR/R/Genetic_subroutine.R
SpadeR/R/print.ChaoSpecies.R
SpadeR/R/SpecAbunHomoMle.R
SpadeR/R/BasicFun.R
SpadeR/R/PanEstFun.Sam.R
SpadeR/R/SpecInciJack2.R
SpadeR/R/SpecAbuniChao1.R
SpadeR/R/Diversity_subroutine.R
SpadeR/R/Multiple_Community_Measure_subroutine.R
SpadeR/R/Q.R
SpadeR/R/SpecInciModelth1.R
SpadeR/R/PanbcFun.R
SpadeR/R/PanbcFun.Sam.R
SpadeR/R/basicAbun.R
SpadeR/R/diff_Chao1bc.R
SpadeR/R/PanFun.Sam.R
SpadeR/R/f.R
SpadeR/R/InfreqSpeciesGroupInprove.R
SpadeR/R/Chao2_bcEstFun.R
SpadeR/R/HeteroEstFun.R
SpadeR/R/PanFun.R
SpadeR/R/Chao2_sharedFun.R
SpadeR/R/SpecAbunJack2.R
SpadeR/R/PanEstFun.R
SpadeR/R/diff_Chao2.R
SpadeR/R/Chao2_sharedEstFun.R
SpadeR/R/Chao2_bcFun.R
SpadeR/R/Two_Community_similarity_subroutine.R
SpadeR/R/SpecInciChao2bc.R
SpadeR/R/VarEstFun.Sam.R
SpadeR/R/SpecAbunChao1bc.R
SpadeR/R/RareSpeciesGroup.R
SpadeR/R/SpecAbunOut.R
SpadeR/R/SpecInciJack1.R
SpadeR/R/SpecInciModelh1.R
SpadeR/R/Cf0Fun.R
SpadeR/R/SpeciesIncidence.R
SpadeR/R/BootstrapFunMa.R
SpadeR/R/SortDataFun.R
SpadeR/R/diff_Panbc.R
SpadeR/R/PanbcEstFun.Sam.R
SpadeR/MD5
SpadeR/DESCRIPTION
SpadeR/man
SpadeR/man/TwoComSimDemoData.Rd
SpadeR/man/MulComSimDemoData.Rd
SpadeR/man/SpecDemoData.Rd
SpadeR/man/SharedSpecDemoData.Rd
SpadeR/man/Diversity.Rd
SpadeR/man/ChaoShared.Rd
SpadeR/man/Genetics.Rd
SpadeR/man/ChaoSpecies.Rd
SpadeR/man/SimilarityMult.Rd
SpadeR/man/spader-package.Rd
SpadeR/man/GeneticsDataAbu.Rd
SpadeR/man/SimilarityPair.Rd
SpadeR/man/DivDemoData.Rd