SpadeR: Species-Richness Prediction and Diversity Estimation with R

Estimation of various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.

AuthorAnne Chao, K. H. Ma, T. C. Hsieh and Chun-Huo Chiu
Date of publication2016-09-06 14:53:57
MaintainerAnne Chao <chao@stat.nthu.edu.tw>
LicenseGPL (>= 3)
Version0.1.1

View on CRAN

Files

SpadeR
SpadeR/NAMESPACE
SpadeR/data
SpadeR/data/GeneticsDataAbu.rda
SpadeR/data/SimilarityPairData.rda
SpadeR/data/ChaoSpeciesData.rda
SpadeR/data/DiversityData.rda
SpadeR/data/SimilarityMultData.rda
SpadeR/data/ChaoSharedData.rda
SpadeR/R
SpadeR/R/SpecInciHomo.R SpadeR/R/HomoFun.R SpadeR/R/SpecInciChao2.R SpadeR/R/Chao1_sharedFun.R SpadeR/R/SpecAbunAce.R SpadeR/R/VarEstFun.R SpadeR/R/DataTransform.R SpadeR/R/basicInci.R SpadeR/R/SpecInciModelth.R SpadeR/R/SpecInciOut.R SpadeR/R/ChaoShared.Ind.R SpadeR/R/print.ChaoShared.R SpadeR/R/diff_Pan.R SpadeR/R/SpecAbunAce1.R SpadeR/R/SpecAbunHomo.R SpadeR/R/logCI.R SpadeR/R/ExtenProbFunMa.R SpadeR/R/diff_Chao1.R SpadeR/R/Chao1_bcEstFun.R SpadeR/R/HeteroFun.R SpadeR/R/SpeciesAbundance.R SpadeR/R/spader.R SpadeR/R/SpecInciiChao2.R SpadeR/R/SpecAbunJack1.R SpadeR/R/ChaoShared.Sam.R SpadeR/R/Chao1_sharedEstFun.R SpadeR/R/RareSpeciesGroupInprove.R SpadeR/R/Chao1_bcFun.R SpadeR/R/diff_Chao2bc.R SpadeR/R/SpecAbunChao1.R SpadeR/R/PanbcEstFun.R SpadeR/R/HomoEstFun.R SpadeR/R/SpecInciModelh.R SpadeR/R/Genetic_subroutine.R SpadeR/R/print.ChaoSpecies.R SpadeR/R/SpecAbunHomoMle.R SpadeR/R/BasicFun.R SpadeR/R/PanEstFun.Sam.R SpadeR/R/SpecInciJack2.R SpadeR/R/SpecAbuniChao1.R SpadeR/R/Diversity_subroutine.R SpadeR/R/Multiple_Community_Measure_subroutine.R SpadeR/R/Q.R SpadeR/R/SpecInciModelth1.R SpadeR/R/PanbcFun.R SpadeR/R/PanbcFun.Sam.R SpadeR/R/basicAbun.R SpadeR/R/diff_Chao1bc.R SpadeR/R/PanFun.Sam.R SpadeR/R/f.R SpadeR/R/InfreqSpeciesGroupInprove.R SpadeR/R/Chao2_bcEstFun.R SpadeR/R/HeteroEstFun.R SpadeR/R/PanFun.R SpadeR/R/Chao2_sharedFun.R SpadeR/R/SpecAbunJack2.R SpadeR/R/PanEstFun.R SpadeR/R/diff_Chao2.R SpadeR/R/Chao2_sharedEstFun.R SpadeR/R/Chao2_bcFun.R SpadeR/R/Two_Community_similarity_subroutine.R SpadeR/R/SpecInciChao2bc.R SpadeR/R/VarEstFun.Sam.R SpadeR/R/SpecAbunChao1bc.R SpadeR/R/RareSpeciesGroup.R SpadeR/R/SpecAbunOut.R SpadeR/R/SpecInciJack1.R SpadeR/R/SpecInciModelh1.R SpadeR/R/Cf0Fun.R SpadeR/R/SpeciesIncidence.R SpadeR/R/BootstrapFunMa.R SpadeR/R/SortDataFun.R SpadeR/R/diff_Panbc.R SpadeR/R/PanbcEstFun.Sam.R
SpadeR/MD5
SpadeR/DESCRIPTION
SpadeR/man
SpadeR/man/TwoComSimDemoData.Rd SpadeR/man/MulComSimDemoData.Rd SpadeR/man/SpecDemoData.Rd SpadeR/man/SharedSpecDemoData.Rd SpadeR/man/Diversity.Rd SpadeR/man/ChaoShared.Rd SpadeR/man/Genetics.Rd SpadeR/man/ChaoSpecies.Rd SpadeR/man/SimilarityMult.Rd SpadeR/man/spader-package.Rd SpadeR/man/GeneticsDataAbu.Rd SpadeR/man/SimilarityPair.Rd SpadeR/man/DivDemoData.Rd

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