Files in SpatialDDLS
Deconvolution of Spatial Transcriptomics Data Based on Neural Networks
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/spatialClustering.R
R/AllGenerics.R
R/loadData.R
R/evalMetrics.R
R/AllClasses.R
R/dnnModel.R
R/SpatialDDLS.R
R/simMixedSpots.R
R/simSingleCell.R
R/plotSpatialCoor.R
R/interGradientsDL.R
R/utils.R
inst/CITATION
inst/doc/realModelExample.Rmd
inst/doc/realModelExample.html
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testdata/counts.tsv.gz
tests/testdata/genesMetadata.tsv.gz
tests/testdata/cellsMetadata.bad.tsv.gz
tests/testdata/genesMetadata.tsv
tests/testdata/counts.tsv
tests/testdata/counts.bad.tsv.gz
tests/testdata/genesMetadata.bad.tsv.gz
tests/testdata/cellsMetadata.tsv.gz
tests/testdata/cellsMetadata.tsv
tests/testdata/sparse_data/matrix.mtx
tests/testdata/sparse_data/genes.tsv
tests/testdata/sparse_data/barcodes.tsv
tests/testthat/test_plotSpatialCoor.R
tests/testthat/test_loadData.R
tests/testthat/test_simSingleCell.R
tests/testthat/test_dnnModel.R
tests/testthat/test_evalMetrics.R
tests/testthat/test_simMixedSpots.R
tests/testthat/test_utils.R
vignettes/realModelExample.Rmd.orig
vignettes/realModelExample.Rmd
vignettes/references.bib
vignettes/top-genes-spatial-2.png
vignettes/clustering-1.png
vignettes/positive-grad-1.png
vignettes/negative-grad-1.png
vignettes/top-genes-spatial-3.png
vignettes/knitr_rendering.R
vignettes/pred-spatial-sep-2.png
vignettes/pred-spatial-sep-1.png
vignettes/pred-spatial-sep-extrinsic-2.png
vignettes/abserr-celltype-1.png
vignettes/pred-spatial-sep-extrinsic-1.png
vignettes/distances-1.png
vignettes/top-genes-spatial-1.png
vignettes/corr-pred-1.png
vignettes/top-genes-spatial-4.png
vignettes/top-genes-spatial-5.png
vignettes/spatialdata-cond-1.png
vignettes/abserr-celltype-sep-1.png
vignettes/pred-spatial-1.png
vignettes/pred-spatial-sep-extrinsic-3.png
vignettes/zscores-1.png
vignettes/pred-spatial-sep-3.png
man/ZinbParametersModel-class.Rd
man/test.pred.Rd
man/spatial.experiments.Rd
man/distErrorPlot.Rd
man/plotSpatialPropAll.Rd
man/prob.cell.types.Rd
man/plots.Rd
man/set.Rd
man/estimateZinbwaveParams.Rd
man/set.list.Rd
man/createSpatialDDLSobject.Rd
man/corrExpPredPlot.Rd
man/single.cell.simul.Rd
man/barPlotCellTypes.Rd
man/PropCellTypes-class.Rd
man/DeconvDLModel-class.Rd
man/SpatialDDLS-class.Rd
man/prob.matrix.Rd
man/loadSTProfiles.Rd
man/SpatialDDLS-Rpackage.Rd
man/features.Rd
man/plotTrainingHistory.Rd
man/zinb.params.Rd
man/SpatialDDLS-package.Rd
man/single.cell.real.Rd
man/plotHeatmapGradsAgg.Rd
man/plotSpatialGeneExpr.Rd
man/loadTrainedModelFromH5.Rd
man/test.metrics.Rd
man/genMixedCellProp.Rd
man/plotSpatialClustering.Rd
man/getProbMatrix.Rd
man/trainDeconvModel.Rd
man/saveTrainedModelAsH5.Rd
man/interGradientsDL.Rd
man/method.Rd
man/deconv.spots.Rd
man/model.Rd
man/trained.model.Rd
man/zinbwave.model.Rd
man/simMixedProfiles.Rd
man/calculateEvalMetrics.Rd
man/topGradientsCellType.Rd
man/project.Rd
man/deconvSpatialDDLS.Rd
man/cell.types.Rd
man/cell.names.Rd
man/blandAltmanLehPlot.Rd
man/saveRDS.Rd
man/mixed.profiles.Rd
man/simSCProfiles.Rd
man/barErrorPlot.Rd
man/plotSpatialProp.Rd
man/training.history.Rd
man/showProbPlot.Rd
man/test.deconv.metrics.Rd
man/spatialPropClustering.Rd
man/plotDistances.Rd
man/installTFpython.Rd
man/preparingToSave.Rd
man/figures/logo.png
man/figures/summary.png
