plotDistances: Plot distances between intrinsic and extrinsic profiles

In SpatialDDLS: Deconvolution of Spatial Transcriptomics Data Based on Neural Networks

Plot distances between intrinsic and extrinsic profiles

Description

Color spots on the spatial coordinates according to distances between intrinsic and extrinsic transcriptional profiles.

Usage

plotDistances(
  object,
  index.st,
  mid.scale = "mean",
  size.point = 1,
  title = NULL,
  theme = NULL
)

Arguments

object	A SpatialDDLS object.
index.st	Index of the spatial transcriptomics data to be plotted. It can be either a position or a name if a named list was provided.
mid.scale	The midpoint of the diverging scale. it may be 'mean' or 'median' (the former by default).
size.point	Size of points (0.1 by default).
title	Title of plot.
theme	ggplot2 theme.

Value

A ggplot object.

See Also

deconvSpatialDDLS trainDeconvModel

SpatialDDLS documentation built on Oct. 31, 2024, 5:07 p.m.