Description Usage Arguments Details Value Author(s) Examples
According to the parameters set by the user, the up-regulatory and down-regulatory subpathway data of drug is obtained.
1 2 3 4 5 6 7 | getDrugSpw(
drug_target_data,
spw_matrix_rnames,
drug.P.value.threshold,
drug.min.sz,
drug.max.sz
)
|
drug_target_data |
A list. A list stores a collection of drug up- and down-regulated subpathways. |
spw_matrix_rnames |
A vector. A vector consisting of row names of subpathway activity profile. |
drug.P.value.threshold |
A value. According to the threshold of the significant P value set by parameter 'drug.p.val.threshold', the drug up-regulation and down-regulatory subpathways were screened. |
drug.min.sz |
A numeric. The drug regulated subpathways intersects with the subpathways in the subpathway activity profile. Then drugs with less than 'drug.spw.min.sz' up- or down-regulated subpathways are removed. |
drug.max.sz |
A numeric. Similar to parameter 'drug.spw.min.sz', drugs with more than 'drug.spw.max.sz' up- or down-regulated subpathways are removed. |
getDrugSpw
a list.
Xudong Han, Junwei Han, Chonghui Liu
1 2 3 4 5 6 |
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