plotGlobalGraph: Plot a global graph of the drug

In SubtypeDrug: Prioritization of Candidate Cancer Subtype Specific Drugs

Description

The 'plotGlobalGraph()' identifies the drug label entered by the user, and plots an integrated diagram including box plot of the normalized drug-disease reverse association scores, null distribution curves of significant P-value, and heat map of cancer subtype sample distribution.

Usage

plotGlobalGraph(
  data,
  drug.label = "",
  overall.main = "",
  overall.cex.main = 1.5,
  cex.submap.axis = 1,
  cex.submap.lab = 1,
  cex.submap.main = 1,
  cex.submap.sub = 1,
  cex.legend = 1
)

Arguments

data	A list of result data generated by function 'PrioSubtypeDrug()'.
drug.label	A character string of drug labels to determine which drug to use for visualization.
overall.main	An overall title for the whole graph. If the user does not make any input, the title will display a drug label.
overall.cex.main	The magnification to be used for overall.main (default: 1.5).
cex.submap.axis	The magnification to be used for axis of each submap annotation relative to the current setting of cex.
cex.submap.lab	The magnification to be used for x and y labels of each submap relative to the current setting of cex.
cex.submap.main	The magnification to be used for main titles of each submap relative to the current setting of cex.
cex.submap.sub	The magnification to be used for sub titles of each submap relative to the current setting of cex.
cex.legend	fontsize of labels for legend.

Details

plotGlobalGraph

Value

A plot.

Author(s)

Xudong Han, Junwei Han, Chonghui Liu

Examples

## Get the result data of PrioSubtypeDrug().
## The data is based on the simulated breast cancer subtype data.
Subtype_drugs<-get("Subtype_drugs")
## Plot a global graph of the drug pirenperone(1.02e-05M).
plotGlobalGraph(data=Subtype_drugs,drug.label="pirenperone(1.02e-05M)")

SubtypeDrug documentation built on May 17, 2021, 9:09 a.m.