SuperLearner: Super Learner Prediction

Implements the super learner prediction method and contains a library of prediction algorithms to be used in the super learner.

Author
Eric Polley [aut, cre], Erin LeDell [aut], Chris Kennedy [aut], Sam Lendle [ctb], Mark van der Laan [aut, ths]
Date of publication
2016-12-01 21:12:50
Maintainer
Eric Polley <polley.eric@mayo.edu>
License
GPL-3
Version
2.0-21
URLs

View on CRAN

Man pages

create.Learner
Factory for learner wrappers
create.SL.xgboost
Factory for XGBoost SL wrappers
CVFolds
Generate list of row numbers for each fold in the...
CV.SuperLearner
Function to get V-fold cross-validated risk estimate for...
listWrappers
list all wrapper functions in SuperLearner
plot.CV.SuperLearner
Graphical display of the V-fold CV risk estimates
predict.SL.bartMachine
bartMachine prediction
predict.SL.xgboost
XGBoost prediction on new data
predict.superlearner
Predict method for SuperLearner object
recombineCVSL
Recombine a CV.SuperLearner fit using a new metalearning...
recombineSL
Recombine a SuperLearner fit using a new metalearning method
SampleSplitSuperLearner
Super Learner Prediction Function
SL.bartMachine
Wrapper for bartMachine learner
SL.cforest
cforest party
SL.xgboost
XGBoost SuperLearner wrapper
summary.CV.SuperLearner
Summary Function for Cross-Validated Super Learner
SuperLearner
Super Learner Prediction Function
SuperLearner.control
Control parameters for the SuperLearner
SuperLearner.CV.control
Control parameters for the cross validation steps in...
SuperLearnerNews
Show the NEWS file for the SuperLearner package
trimLogit
truncated-probabilities logit transformation
write.method.template
Method to estimate the coefficients for the super learner
write.screen.template
screening algorithms for SuperLearner
write.SL.template
Wrapper functions for prediction algorithms in SuperLearner

Files in this package

SuperLearner
SuperLearner/inst
SuperLearner/inst/ToDo
SuperLearner/inst/NEWS
SuperLearner/inst/ChangeLog
SuperLearner/inst/doc
SuperLearner/inst/doc/SuperLearnerPresent.pdf
SuperLearner/inst/doc/SuperLearnerPresent.Rnw
SuperLearner/tests
SuperLearner/tests/testthat.R
SuperLearner/tests/testthat
SuperLearner/tests/testthat/testSummaryCVSuperLearner.R
SuperLearner/tests/testthat/testBartMachine.R
SuperLearner/tests/testthat/testRandomForest.R
SuperLearner/tests/testthat/testCreateLearner.R
SuperLearner/tests/testthat/testMethods.R
SuperLearner/tests/testthat/test_cforest.R
SuperLearner/tests/testthat/test_SuperLearner.R
SuperLearner/tests/testthat/testXGBoost.R
SuperLearner/NAMESPACE
SuperLearner/R
SuperLearner/R/CVFolds.R
SuperLearner/R/SL.gam.R
SuperLearner/R/screen.glmnet.R
SuperLearner/R/CV.SuperLearner.R
SuperLearner/R/SL.xgboost.R
SuperLearner/R/screen.corRank.R
SuperLearner/R/SampleSplitSuperLearner.R
SuperLearner/R/screen.corP.R
SuperLearner/R/SL.leekasso.R
SuperLearner/R/SL.svm.R
SuperLearner/R/snowSuperLearner.R
SuperLearner/R/listWrapper.R
SuperLearner/R/summary.CV.SuperLearner.R
SuperLearner/R/SL.loess.R
SuperLearner/R/internals.R
SuperLearner/R/control.R
SuperLearner/R/SL.nnet.R
SuperLearner/R/SL.rpartPrune.R
SuperLearner/R/SL.randomForest.R
SuperLearner/R/SL.caret.R
SuperLearner/R/SL.logreg.R
SuperLearner/R/SL.mean.R
SuperLearner/R/SL.glm.R
SuperLearner/R/method.R
SuperLearner/R/SL.ipredbagg.R
SuperLearner/R/SL.nnls.R
SuperLearner/R/SuperLearner.R
SuperLearner/R/SL.gbm.R
SuperLearner/R/predict.SuperLearner.R
SuperLearner/R/SL.earth.R
SuperLearner/R/print.SuperLearner.R
SuperLearner/R/SL.polymars.R
SuperLearner/R/SL.step.R
SuperLearner/R/screen.template.R
SuperLearner/R/SL.template.R
SuperLearner/R/plot.CV.SuperLearner.R
SuperLearner/R/trimLogit.R
SuperLearner/R/screen.SIS.R
SuperLearner/R/SL.rpart.R
SuperLearner/R/SL.glmnet.R
SuperLearner/R/mcSuperLearner.R
SuperLearner/R/SL.knn.R
SuperLearner/R/SL.ridge.R
SuperLearner/R/screen.ttest.R
SuperLearner/R/create.Learner.R
SuperLearner/R/recombine.R
SuperLearner/R/screen.randomForest.R
SuperLearner/R/SL.bayesglm.R
SuperLearner/R/SuperLearnerNews.R
SuperLearner/R/zzz.R
SuperLearner/R/SL.cforest.R
SuperLearner/R/SL.bartMachine.R
SuperLearner/vignettes
SuperLearner/vignettes/SuperLearnerR.pdf
SuperLearner/vignettes/SuperLearnerPresent.Rnw
SuperLearner/MD5
SuperLearner/build
SuperLearner/build/vignette.rds
SuperLearner/DESCRIPTION
SuperLearner/man
SuperLearner/man/write.method.template.Rd
SuperLearner/man/predict.SL.xgboost.Rd
SuperLearner/man/write.screen.template.Rd
SuperLearner/man/SL.bartMachine.Rd
SuperLearner/man/SuperLearner.CV.control.Rd
SuperLearner/man/write.SL.template.Rd
SuperLearner/man/SampleSplitSuperLearner.Rd
SuperLearner/man/listWrappers.Rd
SuperLearner/man/predict.superlearner.Rd
SuperLearner/man/create.Learner.Rd
SuperLearner/man/SuperLearner.Rd
SuperLearner/man/plot.CV.SuperLearner.Rd
SuperLearner/man/create.SL.xgboost.Rd
SuperLearner/man/SuperLearnerNews.Rd
SuperLearner/man/CV.SuperLearner.Rd
SuperLearner/man/summary.CV.SuperLearner.Rd
SuperLearner/man/recombineCVSL.Rd
SuperLearner/man/SL.cforest.Rd
SuperLearner/man/CVFolds.Rd
SuperLearner/man/predict.SL.bartMachine.Rd
SuperLearner/man/recombineSL.Rd
SuperLearner/man/SuperLearner.control.Rd
SuperLearner/man/trimLogit.Rd
SuperLearner/man/SL.xgboost.Rd