Sysrecon: Sysrecon

In Sysrecon: Systematical Metabolic Reconstruction

Sysrecon

Description

Input the txt and output the visualization of the steps, transformation and databases and tools.

Usage

Sysrecon(
  inputTxt,
  stepsMatrix,
  stepTypes,
  conversionMatrix,
  conversionTypes,
  toolsMatrix,
  toolsTypes,
  contentTypes
)

Arguments

inputTxt	A txt contains the methods and contents of the metabolic reconstruction in articles.
stepsMatrix	A data frame the marker words, threshold value, steps, group and other information about the metabolic reconstruction. The default file is in the data.
stepTypes	A data frame the labels and groups of the metabolic reconstructions steps. The default file is in the data.
conversionMatrix	A data frame contains the marker words, threshold value, steps, group and other transformation information about the metabolic reconstruction. The default file is in the data.
conversionTypes	A data frame contains the labels and groups of the metabolic reconstructions transformation. The default file is in the data.
toolsMatrix	A data frame contains the marker words, threshold value, steps, group and other information about the metabolic reconstruction databases and tools. The default file is in the data.
toolsTypes	A data frame contains the databases and the tools used in the metabolic reconstruction.
contentTypes	A data frame contains the labels and groups of the metabolic reconstructions content The default file is in the data.

Details

Input takes a data.frame x with two variables v and w and returns the maximum knapsack value and which elements (rows in the data.frame).

Value

The pictures that visualize the steps, transformation and databases and tools of the metabolic reconstruction.

Examples

exam <- Sysrecon(inputTxt, stepsMatrix, stepTypes, conversionMatrix, conversionTypes,
  toolsMatrix, toolsTypes, contentTypes)

Sysrecon documentation built on March 7, 2023, 8:25 p.m.