matrixProcess: A data frame produced by the function map_word_to_step
In Sysrecon: Systematical Metabolic Reconstruction

matrixProcess

R Documentation

A data frame produced by the function map_word_to_step

Description

A data frame produced by the function map_word_to_step

Usage

matrixProcess

Format

A data frame contains 67 variables

degree: the number of the steps used in a article.
SpeciesName: -1 means the input of Species name. 1 means the output of Species name.
TaxonID: -1 means the input of Taxon ID. 1 means the output of Taxon ID.
KEGG: -1 means the input of KEGG reaction. 1 means the output of KEGG reaction.
NCBI: -1 means the input of NCBI gene. 1 means the output of NCBI gene.
Uniprot: -1 means the input of Uniprot gene. 1 means the output of Uniprot.
MetaCyc: -1 means the input of MetaCyc gene. 1 means the output of MetaCyc.
PubChem: -1 means the input of PubChem molecular formula. 1 means the output of PubChem molecular formula.
Brenda: identify whether input the Brenda. -1 means the input of Brenda. 1 means the output of Brenda.
Chebi: -1 means the input of Chebi information. 1 means the the output of Chebi information.
WebGCM: -1 means the input of Web GCM. 1 means the the output of Web GCM.
SpontaneousReaction: -1 means the input of spontaneous reaction. 1 means the the output of spontaneous reaction.
ExtracellularAndPeriplasmicTransportReactions: -1 means the input of Extracellular and periplasmic transport reactions. 1 means the the output of Extracellular and periplasmic transport reactions.
ExchangeReaction: -1 means the input of exchange reaction. 1 means the the output of exchange reaction.
MissingExchangeReaction: -1 means the input of missing exchange reaction. 1 means the the output of missing exchange reaction.
IntracellularTransportReaction: -1 means the input of intracellular transport reaction. 1 means the the output of intracellular transport reaction.
Gene: -1 means the input of gene. 1 means the the output of gene.
Protein: -1 means the input of protein. 1 means the the output of protein.
Knockout: -1 means the input of knockout. 1 means the the output of knockout.
StoichiometricMatrix: -1 means the input of stoichiometric matrix. 1 means the the output of stoichiometric matrix.
ObjectiveReaction: -1 means the input of objective reaction. 1 means the the output of objective reaction.
Constraints: -1 means the input of constraints. 1 means the the output of constraints.
Secretion: -1 means the input of secretion. 1 means the the output of secretion.
Mutisecretion: -1 means the input of mutisecretion. 1 means the the output of mutisecretion.
RichMedia: -1 means the input of rich media. 1 means the the output of rich media.
GenomeSequence: -1 means the input of genome sequence. 1 means the the output of genome sequence.
ProteomeSequence: -1 means the input of proteome sequence. 1 means the the output of proteome sequence.
AminoAcidWeight: -1 means the input of amino acid weight. 1 means the the output of amino acid weight.
AminoAcidMolecularWeight: -1 means the input of amino acid molecular weight. 1 means the the output of amino acid molecular weight.
NucleotideWeight: -1 means the input of nucleotide weight. 1 means the the output of nucleotide weight.
NucleotideMolecularWeight: -1 means the input of nucleotide molecular weight. 1 means the the output of nucleotide molecular weight.
DryWeight: -1 means the input of dry weight. 1 means the the output of dry weight.
BiomassReaction: -1 means the input of biomass reaction. 1 means the the output of biomass reaction.
DemandReaction: -1 means the input of demand reaction. 1 means the the output of demand reaction.
SinkReaction: -1 means the input of sink reaction. 1 means the the output of sink reaction.
GapReaction: -1 means the input of gap reaction. 1 means the the output of gap reaction.
MinORMax: -1 means the input of gap reaction. 1 means the the output of gap reaction.
GeneticInformation: -1 means the input of genetic information. 1 means the the output of genetic information.
MetabolicFunction: -1 means the input of metabolic function. 1 means the the output of metabolic function.
Metabolites: -1 means the input of metabolites. 1 means the the output of metabolites.
BiomassMetabolites: -1 means the input of biomass metabolites. 1 means the the output of biomass metabolites.
MetabolicReaction: -1 means the input of metabolic reaction. 1 means the the output of metabolic reaction.
ReconstructionData: -1 means the input of reconstruction data. 1 means the the output of reconstruction data.
DataStatistics: -1 means the input of data statistics. 1 means the the output of data statistics.
NeutralMolecularFormula: -1 means the input of neutral molecular formula. 1 means the the output of neutral molecular formula.
ChargedMolecularFormula: -1 means the input of charged molecular formula. 1 means the the output of charged molecular formula.
ConservationOfMassAndCharge: -1 means the input of conservation of mass and charge. 1 means the the output of conservation of mass and charge.
GibbsFreeEnergyInformation: -1 means the input of gibbs free energy information. 1 means the the output of gibbs free energy information.
Mass_ChargeConservationAssessment: -1 means the input of mass-charge conservation assessment. 1 means the the output of conservation assessment.
CellularCompartment: -1 means the input of cellular compartment. 1 means the the output of cellular compartment.
SubsystemInformation: -1 means the input of subsystem information. 1 means the the output of subsystem information.
IdentifiersInKEGG: -1 means the input of identifiers in KEGG. 1 means the the output of identifiers in KEGG.
IdentifiersInMetaCyc: -1 means the input of identifiers in MetaCyc. 1 means the the output of identifiers in MetaCyc.
UniformIdentifier: -1 means the input of uniform identifier. 1 means the the output of uniform identifier.
Coefficient: -1 means the input of coefficient. 1 means the the output of coefficient.
ScatterPlot: -1 means the input of scatter plot. 1 means the the output of scatter plot.
TerminalMetabolite: -1 means the input of terminal metabolite. 1 means the the output of terminal metabolite.
TypeIIIPathway: -1 means the input of Type III pathway. 1 means the the output of Type III pathway.
NetworkGap: -1 means the input of network gap. 1 means the the output of network gap.
Growth: -1 means the input of growth. 1 means the the output of growth.
BlockReaction: -1 means the input of block reaction. 1 means the the output of block reaction.
MetabolicFlux: -1 means the input of metabolic flux. 1 means the the output of metabolic flux.
ModelPredictCorrectly: 1 means the output of model PredictCorrectly.
ModelGrowingTooFast: -1 means the input of model growing too fast. 1 means the the output of model growing too fast.
SBML: -1 means the input of SBML file. 1 means the the output of SBML file.
Mat: -1 means the input of Mat file. 1 means the the output of Mat file.
Excel: -1 means the input of Excel file. 1 means the the output of Excel file.