matrixProcessConversion: A data frame produced by the function map_word_to_step

In Sysrecon: Systematical Metabolic Reconstruction

A data frame produced by the function map_word_to_step

Description

A data frame produced by the function map_word_to_step

Usage

matrixProcessConversion

Format

A data frame contains 64 variables

degree

the number of the steps used in a article.

SpeciesName

1 means the output of Species name.

TaxonID

1 means the output of Taxon ID.

NCBI

1 means the output of NCBI.

Uniprot

1 means the output of Uniprot.

KEGG

1 means the output of KEGG.

MetaCyc

1 means the output of MetaCyc.

PubChem

1 means the output of PubChem.

Brenda

1 means the output of Brenda.

Download

1 means the output of Download.

GeneticInformation

1 means the output of Genetic information.

ProteinInformation

1 means the output of Protein information.

GenomeSequence

1 means the output of Genome sequence.

ProteinSequence

1 means the output of Protein sequence.

MetabolicFunctionInformation

1 means the output of Metabolic function information.

Metabolites

1 means the output of Metabolites.

Cofactor

1 means the output of Cofactor.

Nucleotides

1 means the output of Nucleotides.

AminoAcid

1 means the output of Amino acid.

MolecularWeight

1 means the output of Molecular weight.

DryWeight

1 means the output of Dry weight.

MetabolicReaction

1 means the output of Metabolic reaction.

TerminalMetabolite

1 means the output of Terminal metabolite.

Secretion

1 means the output of Secretion.

BiomassReaction

1 means the output of Biomass reaction.

DemandReaction

1 means the output of Demand reaction.

SinkReaction

1 means the output of Sink reaction.

GapReaction

1 means the output of Gap reaction.

SpontaneousReaction

1 means the output of Spontaneous reaction.

ExtracellularAndPeriplasmicTransportReactions

1 means the output of Extracellular and periplasmic transport reactions reaction.

ExchangeReaction

1 means the output of Exchange reaction.

IntracellularTransportReaction

1 means the output of Intracellular transport reaction.

ReactionFlux

1 means the output of Reaction flux.

GPR

1 means the output of GPR.

BlastComparison

1 means the output of Blast comparison.

Homology

1 means the output of Homology.

HomologousGene

1 means the output of Homology gene.

StoichiometricMatrix

1 means the output of Stoichiometric matrix.

Knockout

1 means the output of Knockout.

TargetReaction

1 means the output of Target reaction.

Restrictions

1 means the output of Restrictions.

GrowthConditions

1 means the output of Growth conditions.

MinORMax

1 means the output of min | max.

ReconstructionData

1 means the output of Reconstruction data.

FVA

1 means the output of FVA.

MetabolicFlux

1 means the output of Metabolic flux.

Statistics

1 means the output of Metabolic Statistics.

NeutralMolecularFormula

1 means the output of Neutral molecular formula.

ChargedMolecularFormula

1 means the output of Charged molecular formula.

LiteratureDataCollection

1 means the output of Literature data collection.

ConservationOfMassAndCharge

1 means the output of Conservation of mass and charge.

GibbsFreeEnergy

1 means the output of Gibbs free energy.

CellCompartmentInformation

1 means the output of Cell compartment information.

SubsystemInformation

1 means the output of Subsystem information.

MetaboliteIdentification

1 means the output of Metabolite Identification.

Unite

1 means the output of Unite.

ManualPlanning

1 means the output of Manual planning.

Coefficient

1 means the output of Coefficient.

ScatterPlot

1 means the output of Scatter plot.

TestReport

1 means the output of Test Report.

TypeIIIPath

1 means the output of Type III path.

SBML

1 means the output of SBML file.

Mat

1 means the output of Mat file.

Excel

1 means the output of Excel file.

Sysrecon documentation built on March 7, 2023, 8:25 p.m.