toolsMatrix: A data frame contains the details of the databases and tools...

In Sysrecon: Systematical Metabolic Reconstruction

A data frame contains the details of the databases and tools of the metabolic reconstruction

Description

A data frame contains the details of the databases and tools of the metabolic reconstruction

Usage

toolsMatrix

Format

A data frame contains the 93 rows and 46 varibales.

MarkerWords

the key words of the steps of metabolic reconstruction

ThresholdValue

the values filter the steps after the mapping

Steps

the steps of metabolic reonstruction

Group

the classification of the steps

UniProtKnowledgeBase

1 means the output of UniProt Knowledgebase.

NCBI_Gene

1 means the output of NCBI Gene.

KEGG_Genes

1 means the output of KEGG Genes.

KEGG_Genome

1 means the output of KEGG Genome.

NCBI_Protein

1 means the output of NCBI Protein.

KEGG_Pathway

1 means the output of KEGG Pathway.

KEGG_Compound

1 means the output of KEGG Compound.

KEGG_Reaction

1 means the output of KEGG Reaction.

BioCyc

1 means the output of BioCyc.

MetaCycCompound

1 means the output of MetaCyc Compound.

MetaCycReaction

1 means the output of MetaCyc Reaction.

KEGGREST

1 means the output of KEGGREST.

COBRA

1 means the output of COBRA.

RAVEN

1 means the output of RAVEN.

CarveMe

1 means the output of CarveMe.

AuReMe

1 means the output of AuReMe.

MetaDraft

1 means the output of MetaDraft.

ModelSEED

1 means the output of ModelSEED.

PathwayTools

1 means the output of Pathway Tools.

Merlin

1 means the output of Merlin.

AGORA

1 means the output of AGORA.

COBRApy

1 means the output of COBRApy.

BLAST

1 means the output of BLAST.

ExperimentOrLiterature

1 means the output of Experiment or literature.

BRENDA

1 means the output of BRENDA.

minval

1 means the output of minval.

ChEBI

1 means the output of ChEBI.

PubChem_Compound

1 means the output of PubChem-compound.

ChEMBL_Compound

1 means the output of ChEMBL compound.

Rhea

1 means the output of Rhea.

pKa_DB

1 means the output of pKa DB.

rsbml

1 means the output of rsbml.

PipelinePilot

1 means the output of Pipeline Pilot.

Sybil

1 means the output of Sybil.

BUSCA

1 means the output of BUSCA.

PSORT

1 means the output of PSORT.

PASUB

1 means the output of PASUB.

PubChem_Substance

1 means the output of PubChem substance.

STRING

1 means the output of STRING.

ManualPlanning

1 means the output of Manual planning.

CMR

1 means the output of CMR.

g2f

1 means the output of g2f.

Sysrecon documentation built on March 7, 2023, 8:25 p.m.