TDA: Statistical Tools for Topological Data Analysis

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries GUDHI, Dionysus, and PHAT.

Author
Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Date of publication
2016-06-16 05:58:42
Maintainer
Jisu Kim <jisuk1@andrew.cmu.edu>
License
GPL-3
Version
1.5

View on CRAN

Man pages

alphaComplexDiag
Alpha Complex Persistence Diagram
alphaShapeDiag
Persistence Diagram of Alpha Shape in 3d
bootstrapBand
Bootstrap Confidence Band
bootstrapDiagram
Bootstrapped Confidence Set for a Persistence Diagram, using...
bottleneck
Bottleneck distance between two persistence diagrams
circleUnif
Uniform Sample From The Circle
clusterTree
Density clustering: the cluster tree
distFct
Distance function
dtm
Distance to Measure Function
gridDiag
Persistence Diagram of a function over a Grid
hausdInterval
Subsampling Confidence Interval for the Hausdorff Distance...
kde
Kernel Density Estimator over a Grid of Points
kernelDist
Kernel distance over a Grid of Points
knnDE
k Nearest Neighbors Density Estimator over a Grid of Points
landscape
The Persistence Landscape Function
maxPersistence
Maximal Persistence Method
multipBootstrap
Multiplier Bootstrap for Persistence Landscapes and...
plot.clusterTree
Plots the Cluster Tree
plot.diagram
Plot the Persistence Diagram
plot.maxPersistence
Summary plot for the maxPersistence function
ripsDiag
Rips Persistence Diagram
silhouette
The Persistence Silhouette Function
sphereUnif
Uniform Sample From The Sphere S^d
summary.diagram
'print' and 'summary' for 'diagram'
TDA-internal
Internal TDA functions
TDA-package
Statistical Tools for Topological Data Analysis
torusUnif
Uniform Sample From The 3D Torus
wasserstein
Wasserstein distance between two persistence diagrams

Files in this package

TDA
TDA/inst
TDA/inst/doc
TDA/inst/doc/article.R
TDA/inst/doc/article.pdf
TDA/inst/doc/article.Rnw
TDA/src
TDA/src/Makevars
TDA/src/tdautils
TDA/src/tdautils/ripsArbit.h
TDA/src/tdautils/typecastUtils.h
TDA/src/tdautils/kernelUtils.h
TDA/src/tdautils/gudhiUtils.h
TDA/src/tdautils/ripsL2.h
TDA/src/tdautils/cgalUtils.h
TDA/src/tdautils/phatUtils.h
TDA/src/tdautils/gridUtils.h
TDA/src/tdautils/dionysusUtils.h
TDA/src/CGAL
TDA/src/CGAL/Sixtuple.h
TDA/src/CGAL/Polygon_2_algorithms.h
TDA/src/CGAL/kernel_to_kernel.h
TDA/src/CGAL/Conic_2.h
TDA/src/CGAL/Triangle_2.h
TDA/src/CGAL/Sphere_3.h
TDA/src/CGAL/Regular_triangulation_cell_base_with_weighted_circumcenter_3.h
TDA/src/CGAL/Mpzf.h
TDA/src/CGAL/Bbox_3.h
TDA/src/CGAL/Segment_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/utils_classes.h
TDA/src/CGAL/Arithmetic_kernel
TDA/src/CGAL/Arithmetic_kernel/Arithmetic_kernel_base.h
TDA/src/CGAL/Rational_traits.h
TDA/src/CGAL/triangulation_assertions.h
TDA/src/CGAL/Line_2_Triangle_2_intersection.h
TDA/src/CGAL/Origin_impl.h
TDA/src/CGAL/is_convertible.h
TDA/src/CGAL/bbox_intersection_3.h
TDA/src/CGAL/Point_2_Segment_2_intersection.h
TDA/src/CGAL/convert_to_bfi.h
TDA/src/CGAL/mpq_class.h
TDA/src/CGAL/Random_impl.h
TDA/src/CGAL/Triangle_2_Triangle_2_do_intersect.h
TDA/src/CGAL/int.h
TDA/src/CGAL/Hilbert_sort_median_2.h
TDA/src/CGAL/spatial_sort.h
TDA/src/CGAL/Homogeneous_converter.h
TDA/src/CGAL/Location_policy.h
TDA/src/CGAL/Circle_3.h
TDA/src/CGAL/Triangulation_structural_filtering_traits.h
TDA/src/CGAL/Triangle_3_Triangle_3_intersection.h
TDA/src/CGAL/Gmpq.h
TDA/src/CGAL/Hilbert_sort_d.h
TDA/src/CGAL/Triangle_3_Tetrahedron_3_do_intersect.h
TDA/src/CGAL/intersection_2_2.h
TDA/src/CGAL/Triangulation_cell_base_with_circumcenter_3.h
TDA/src/CGAL/Point_2_Line_2_intersection.h
TDA/src/CGAL/Exact_predicates_exact_constructions_kernel_with_sqrt.h
TDA/src/CGAL/Iso_rectangle_2.h
TDA/src/CGAL/Multiscale_sort.h
TDA/src/CGAL/Intersections_3
TDA/src/CGAL/Intersections_3/intersection_3_1_impl.h
TDA/src/CGAL/is_iterator.h
TDA/src/CGAL/use.h
TDA/src/CGAL/Scalar_factor_traits.h
TDA/src/CGAL/Random_access_value_adaptor.h
TDA/src/CGAL/Triangle_3_Ray_3_do_intersect.h
TDA/src/CGAL/intersection_2.h
TDA/src/CGAL/squared_distance_2_2.h
TDA/src/CGAL/gmp.h
TDA/src/CGAL/extended_euclidean_algorithm.h
TDA/src/CGAL/Triangulation_hierarchy_3.h
TDA/src/CGAL/enum.h
TDA/src/CGAL/Time_stamper.h
TDA/src/CGAL/Lazy.h
TDA/src/CGAL/basic_constructions_2.h
TDA/src/CGAL/CC_safe_handle.h
TDA/src/CGAL/Triangulation_utils_2.h
TDA/src/CGAL/Circle_2.h
TDA/src/CGAL/Nested_iterator.h
TDA/src/CGAL/Filtered_kernel_fwd.h
TDA/src/CGAL/kernel_assertions.h
TDA/src/CGAL/Kernel_checker.h
TDA/src/CGAL/Quotient_fwd.h
TDA/src/CGAL/Gmpz.h
TDA/src/CGAL/cartesian_homogeneous_conversion.h
TDA/src/CGAL/Triangle_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/Kernel_d
TDA/src/CGAL/Kernel_d/Kernel_classesCd.h
TDA/src/CGAL/Kernel_d/HyperplaneHd.h
TDA/src/CGAL/Kernel_d/Hyperplane_d.h
TDA/src/CGAL/Kernel_d/Pair_d.h
TDA/src/CGAL/Kernel_d/HyperplaneCd_impl.h
TDA/src/CGAL/Kernel_d/function_objectsCd.h
TDA/src/CGAL/Kernel_d/Line_d_impl.h
TDA/src/CGAL/Kernel_d/HyperplaneHd_impl.h
TDA/src/CGAL/Kernel_d/DirectionHd.h
TDA/src/CGAL/Kernel_d/function_objects.h
TDA/src/CGAL/Kernel_d/PVDHAHd_impl.h
TDA/src/CGAL/Kernel_d/Point_d.h
TDA/src/CGAL/Kernel_d/Vector_d.h
TDA/src/CGAL/Kernel_d/Vector__.h
TDA/src/CGAL/Kernel_d/Line_d.h
TDA/src/CGAL/Kernel_d/PointCd.h
TDA/src/CGAL/Kernel_d/Kernel_classesHd.h
TDA/src/CGAL/Kernel_d/PointHd.h
TDA/src/CGAL/Kernel_d/PointCd_impl.h
TDA/src/CGAL/Kernel_d/Linear_algebraHd_impl.h
TDA/src/CGAL/Kernel_d/function_objectsHd.h
TDA/src/CGAL/Kernel_d/Direction_d.h
TDA/src/CGAL/Kernel_d/Aff_transformation_d.h
TDA/src/CGAL/Kernel_d/VectorCd.h
TDA/src/CGAL/Kernel_d/Linear_algebraCd_impl.h
TDA/src/CGAL/Kernel_d/simple_objects.h
TDA/src/CGAL/Kernel_d/VectorHd_impl.h
TDA/src/CGAL/Kernel_d/DirectionHd_impl.h
TDA/src/CGAL/Kernel_d/VectorCd_impl.h
TDA/src/CGAL/Kernel_d/DirectionCd_impl.h
TDA/src/CGAL/Kernel_d/Ray_d.h
TDA/src/CGAL/Kernel_d/debug.h
TDA/src/CGAL/Kernel_d/Aff_transformationHd.h
TDA/src/CGAL/Kernel_d/Interface_classes.h
TDA/src/CGAL/Kernel_d/PVDHACd_impl.h
TDA/src/CGAL/Kernel_d/VectorHd.h
TDA/src/CGAL/Kernel_d/Sphere_d.h
TDA/src/CGAL/Kernel_d/DirectionCd.h
TDA/src/CGAL/Kernel_d/Aff_transformationCd.h
TDA/src/CGAL/Kernel_d/intersection_objectsCd.h
TDA/src/CGAL/Kernel_d/Iso_box_d.h
TDA/src/CGAL/Kernel_d/Matrix__.h
TDA/src/CGAL/Kernel_d/intersection_objectsHd.h
TDA/src/CGAL/Kernel_d/intersection_objects_d.h
TDA/src/CGAL/Kernel_d/PointHd_impl.h
TDA/src/CGAL/Kernel_d/Segment_d.h
TDA/src/CGAL/Kernel_d/Tuple_d.h
TDA/src/CGAL/Kernel_d/Cartesian_const_iterator_d.h
TDA/src/CGAL/Kernel_d/HyperplaneCd.h
TDA/src/CGAL/Cartesian
TDA/src/CGAL/Cartesian/Aff_transformation_rep_3.h
TDA/src/CGAL/Cartesian/Triangle_2.h
TDA/src/CGAL/Cartesian/Sphere_3.h
TDA/src/CGAL/Cartesian/Circle_3.h
TDA/src/CGAL/Cartesian/Iso_rectangle_2.h
TDA/src/CGAL/Cartesian/basic_constructions_2.h
TDA/src/CGAL/Cartesian/Circle_2.h
TDA/src/CGAL/Cartesian/Scaling_rep_2.h
TDA/src/CGAL/Cartesian/Direction_2.h
TDA/src/CGAL/Cartesian/Aff_transformation_2.h
TDA/src/CGAL/Cartesian/function_objects.h
TDA/src/CGAL/Cartesian/Vector_2.h
TDA/src/CGAL/Cartesian/Scaling_rep_3.h
TDA/src/CGAL/Cartesian/Segment_2.h
TDA/src/CGAL/Cartesian/solve_3.h
TDA/src/CGAL/Cartesian/Data_accessor_2.h
TDA/src/CGAL/Cartesian/Translation_rep_2.h
TDA/src/CGAL/Cartesian/predicates_on_points_3.h
TDA/src/CGAL/Cartesian/MatrixC33.h
TDA/src/CGAL/Cartesian/Ray_2.h
TDA/src/CGAL/Cartesian/plane_constructions_3.h
TDA/src/CGAL/Cartesian/Line_3.h
TDA/src/CGAL/Cartesian/predicates_on_points_2.h
TDA/src/CGAL/Cartesian/Iso_cuboid_3.h
TDA/src/CGAL/Cartesian/Point_3.h
TDA/src/CGAL/Cartesian/Aff_transformation_rep_2.h
TDA/src/CGAL/Cartesian/Tetrahedron_3.h
TDA/src/CGAL/Cartesian/Line_2.h
TDA/src/CGAL/Cartesian/point_constructions_2.h
TDA/src/CGAL/Cartesian/basic_constructions_3.h
TDA/src/CGAL/Cartesian/Translation_rep_3.h
TDA/src/CGAL/Cartesian/line_constructions_2.h
TDA/src/CGAL/Cartesian/Triangle_3.h
TDA/src/CGAL/Cartesian/predicates_on_planes_3.h
TDA/src/CGAL/Cartesian/predicates_on_directions_2.h
TDA/src/CGAL/Cartesian/Plane_3.h
TDA/src/CGAL/Cartesian/Ray_3.h
TDA/src/CGAL/Cartesian/Point_2.h
TDA/src/CGAL/Cartesian/Segment_3.h
TDA/src/CGAL/Cartesian/Rotation_rep_2.h
TDA/src/CGAL/Cartesian/ft_constructions_3.h
TDA/src/CGAL/Cartesian/Aff_transformation_3.h
TDA/src/CGAL/Cartesian/point_constructions_3.h
TDA/src/CGAL/Cartesian/Vector_3.h
TDA/src/CGAL/Cartesian/ft_constructions_2.h
TDA/src/CGAL/Cartesian/Cartesian_base.h
TDA/src/CGAL/Cartesian/Direction_3.h
TDA/src/CGAL/Intersections_2
TDA/src/CGAL/Intersections_2/Triangle_2_Triangle_2_intersection_impl.h
TDA/src/CGAL/Hilbert_sort_middle_3.h
TDA/src/CGAL/min_max_n.h
TDA/src/CGAL/Cache.h
TDA/src/CGAL/version.h
TDA/src/CGAL/Direction_2.h
TDA/src/CGAL/Fraction_traits.h
TDA/src/CGAL/intersection_3_1.h
TDA/src/CGAL/constant.h
TDA/src/CGAL/Delaunay_triangulation_cell_base_3.h
TDA/src/CGAL/Homogeneous
TDA/src/CGAL/Homogeneous/PointH3.h
TDA/src/CGAL/Homogeneous/basic_constructionsH3.h
TDA/src/CGAL/Homogeneous/function_objects.h
TDA/src/CGAL/Homogeneous/VectorH3.h
TDA/src/CGAL/Homogeneous/Iso_rectangleH2.h
TDA/src/CGAL/Homogeneous/Homogeneous_base.h
TDA/src/CGAL/Homogeneous/DirectionH2.h
TDA/src/CGAL/Homogeneous/predicates_on_pointsH3.h
TDA/src/CGAL/Homogeneous/distance_predicatesH3.h
TDA/src/CGAL/Homogeneous/Iso_cuboidH3.h
TDA/src/CGAL/Homogeneous/Aff_transformationH3.h
TDA/src/CGAL/Homogeneous/PlaneH3.h
TDA/src/CGAL/Homogeneous/RayH3.h
TDA/src/CGAL/Homogeneous/distance_predicatesH2.h
TDA/src/CGAL/Homogeneous/predicates_on_pointsH2.h
TDA/src/CGAL/Homogeneous/PointH2.h
TDA/src/CGAL/Homogeneous/Data_accessorH2.h
TDA/src/CGAL/Homogeneous/predicates_on_directionsH2.h
TDA/src/CGAL/Homogeneous/Aff_transformationH2.h
TDA/src/CGAL/Homogeneous/DirectionH3.h
TDA/src/CGAL/Homogeneous/SphereH3.h
TDA/src/CGAL/Homogeneous/VectorH2.h
TDA/src/CGAL/Homogeneous/LineH2.h
TDA/src/CGAL/Homogeneous/basic_constructionsH2.h
TDA/src/CGAL/intersection_2_3.h
TDA/src/CGAL/gmpxx_coercion_traits.h
TDA/src/CGAL/transforming_iterator.h
TDA/src/CGAL/Aff_transformation_2.h
TDA/src/CGAL/function_objects.h
TDA/src/CGAL/tags.h
TDA/src/CGAL/Exact_predicates_exact_constructions_kernel.h
TDA/src/CGAL/constructions
TDA/src/CGAL/constructions/kernel_ftC3.h
TDA/src/CGAL/constructions/constructions_on_weighted_points_cartesian_3.h
TDA/src/CGAL/constructions/kernel_ftC2.h
TDA/src/CGAL/Vector_2.h
TDA/src/CGAL/Line_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/array.h
TDA/src/CGAL/predicates
TDA/src/CGAL/predicates/sign_of_determinant.h
TDA/src/CGAL/predicates/kernel_ftC3.h
TDA/src/CGAL/predicates/predicates_on_weighted_points_cartesian_3.h
TDA/src/CGAL/predicates/Regular_triangulation_rtH3.h
TDA/src/CGAL/predicates/kernel_ftC2.h
TDA/src/CGAL/predicates/Regular_triangulation_ftC3.h
TDA/src/CGAL/Sqrt_extension_fwd.h
TDA/src/CGAL/Triangulation_cell_base_3.h
TDA/src/CGAL/GMP_arithmetic_kernel.h
TDA/src/CGAL/Circle_2_Line_2_intersection.h
TDA/src/CGAL/representation_tags.h
TDA/src/CGAL/Residue.h
TDA/src/CGAL/Segment_2.h
TDA/src/CGAL/N_step_adaptor.h
TDA/src/CGAL/is_streamable.h
TDA/src/CGAL/compiler_config.h
TDA/src/CGAL/internal
TDA/src/CGAL/internal/Regular_triangulation_filtered_traits_3.h
TDA/src/CGAL/internal/Intersections_3
TDA/src/CGAL/internal/Intersections_3/Triangle_3_Ray_3_intersection.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Triangle_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Sphere_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Triangle_3_Line_3_intersection.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Segment_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Bbox_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Plane_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Line_3_do_intersect.h
TDA/src/CGAL/internal/Intersections_3/Triangle_3_Segment_3_intersection.h
TDA/src/CGAL/internal/Intersections_3/Bbox_3_Ray_3_do_intersect.h
TDA/src/CGAL/internal/info_check.h
TDA/src/CGAL/internal/Combination_enumerator.h
TDA/src/CGAL/internal/Triangulation
TDA/src/CGAL/internal/Triangulation/utilities.h
TDA/src/CGAL/internal/Triangulation/Dummy_TDS.h
TDA/src/CGAL/internal/Triangulation/Triangulation_ds_iterators.h
TDA/src/CGAL/internal/Exact_type_selector.h
TDA/src/CGAL/internal/Lazy_alpha_nt_3.h
TDA/src/CGAL/internal/Dummy_tds_3.h
TDA/src/CGAL/internal/Triangulation_ds_iterators_3.h
TDA/src/CGAL/internal/Delaunay_triangulation_hierarchy_3.h
TDA/src/CGAL/internal/Projection_traits_3.h
TDA/src/CGAL/internal/Static_or_dynamic_array.h
TDA/src/CGAL/internal/Triangulation_ds_circulators_3.h
TDA/src/CGAL/internal/Static_filters
TDA/src/CGAL/internal/Static_filters/Static_filters.h
TDA/src/CGAL/internal/Static_filters/Side_of_oriented_circle_2.h
TDA/src/CGAL/internal/Static_filters/Do_intersect_3.h
TDA/src/CGAL/internal/Static_filters/Orientation_2.h
TDA/src/CGAL/internal/Static_filters/Power_test_3.h
TDA/src/CGAL/internal/Static_filters/tools.h
TDA/src/CGAL/internal/Static_filters/Equal_3.h
TDA/src/CGAL/internal/Static_filters/Is_degenerate_3.h
TDA/src/CGAL/internal/Static_filters/Angle_3.h
TDA/src/CGAL/internal/Static_filters/Compare_y_at_x_2.h
TDA/src/CGAL/internal/Static_filters/Compare_weighted_squared_radius_3.h
TDA/src/CGAL/internal/Static_filters/Compare_squared_radius_3.h
TDA/src/CGAL/internal/Static_filters/Orientation_3.h
TDA/src/CGAL/internal/Static_filters/Side_of_oriented_sphere_3.h
TDA/src/CGAL/internal/Static_filters/Static_filter_error.h
TDA/src/CGAL/internal/Static_filters/Regular_triangulation_static_filters_traits_3.h
TDA/src/CGAL/Triangulation_data_structure_3.h
TDA/src/CGAL/result_of.h
TDA/src/CGAL/ipower.h
TDA/src/CGAL/Alpha_shape_cell_base_3.h
TDA/src/CGAL/memory.h
TDA/src/CGAL/Homogeneous_d.h
TDA/src/CGAL/Concurrent_compact_container.h
TDA/src/CGAL/N_step_adaptor_derived.h
TDA/src/CGAL/Counting_iterator.h
TDA/src/CGAL/Segment_2_Segment_2_intersection.h
TDA/src/CGAL/squared_distance_3_0.h
TDA/src/CGAL/tss.h
TDA/src/CGAL/argument_swaps.h
TDA/src/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h
TDA/src/CGAL/Projection_traits_yz_3.h
TDA/src/CGAL/Circulator_project.h
TDA/src/CGAL/Ray_2_Line_2_intersection.h
TDA/src/CGAL/Hilbert_sort_middle_base.h
TDA/src/CGAL/Origin.h
TDA/src/CGAL/number_type_config.h
TDA/src/CGAL/kernel_basic.h
TDA/src/CGAL/Is_a_predicate.h
TDA/src/CGAL/Unique_hash_map.h
TDA/src/CGAL/Simple_cartesian.h
TDA/src/CGAL/predicates_on_points_3.h
TDA/src/CGAL/Interval_nt.h
TDA/src/CGAL/squared_distance_3_1.h
TDA/src/CGAL/Linear_algebraHd.h
TDA/src/CGAL/predicates_d.h
TDA/src/CGAL/config.h
TDA/src/CGAL/TDS_full_cell_default_storage_policy.h
TDA/src/CGAL/assertions_behaviour.h
TDA/src/CGAL/determinant.h
TDA/src/CGAL/MP_Float_impl.h
TDA/src/CGAL/vector.h
TDA/src/CGAL/Triangulation_vertex.h
TDA/src/CGAL/Hilbert_sort_2.h
TDA/src/CGAL/number_utils.h
TDA/src/CGAL/basic_classes.h
TDA/src/CGAL/Get_arithmetic_kernel.h
TDA/src/CGAL/Sqrt_extension
TDA/src/CGAL/Sqrt_extension/convert_to_bfi.h
TDA/src/CGAL/Sqrt_extension/Scalar_factor_traits.h
TDA/src/CGAL/Sqrt_extension/Wang_traits.h
TDA/src/CGAL/Sqrt_extension/Fraction_traits.h
TDA/src/CGAL/Sqrt_extension/Get_arithmetic_kernel.h
TDA/src/CGAL/Sqrt_extension/Sqrt_extension_type.h
TDA/src/CGAL/Sqrt_extension/Real_embeddable_traits.h
TDA/src/CGAL/Sqrt_extension/Chinese_remainder_traits.h
TDA/src/CGAL/Sqrt_extension/Algebraic_structure_traits.h
TDA/src/CGAL/Sqrt_extension/Eigen_NumTraits.h
TDA/src/CGAL/Sqrt_extension/io.h
TDA/src/CGAL/Sqrt_extension/Coercion_traits.h
TDA/src/CGAL/Sqrt_extension/Algebraic_extension_traits.h
TDA/src/CGAL/Sqrt_extension/Modular_traits.h
TDA/src/CGAL/Triangulation_ds_vertex.h
TDA/src/CGAL/Ray_2.h
TDA/src/CGAL/determinant_of_vectors.h
TDA/src/CGAL/test_FPU_rounding_mode_impl.h
TDA/src/CGAL/assertions.h
TDA/src/CGAL/Line_2_Line_2_intersection.h
TDA/src/CGAL/squared_distance_3_2.h
TDA/src/CGAL/Intersection_traits_3.h
TDA/src/CGAL/Circulator_identity.h
TDA/src/CGAL/Regular_triangulation_cell_base_3.h
TDA/src/CGAL/Needs_parens_as_product.h
TDA/src/CGAL/typeset.h
TDA/src/CGAL/Hilbert_sort_median_3.h
TDA/src/CGAL/Line_3.h
TDA/src/CGAL/utility.h
TDA/src/CGAL/predicates_on_points_2.h
TDA/src/CGAL/Has_timestamp.h
TDA/src/CGAL/Triangulation_ds_full_cell.h
TDA/src/CGAL/Weighted_alpha_shape_euclidean_traits_3.h
TDA/src/CGAL/Triangulation_ds_cell_base_3.h
TDA/src/CGAL/Conic_misc.h
TDA/src/CGAL/Tools
TDA/src/CGAL/Tools/chained_map.h
TDA/src/CGAL/Point_2_Point_2_intersection.h
TDA/src/CGAL/distance_predicates_2.h
TDA/src/CGAL/Multiset.h
TDA/src/CGAL/Iso_cuboid_3.h
TDA/src/CGAL/Triangle_2_Triangle_2_intersection.h
TDA/src/CGAL/Hilbert_sort_median_d.h
TDA/src/CGAL/Point_3.h
TDA/src/CGAL/iterator_from_indices.h
TDA/src/CGAL/Triangulation_ds_vertex_base_3.h
TDA/src/CGAL/algorithm.h
TDA/src/CGAL/predicates_on_lines_2.h
TDA/src/CGAL/Triangulation_geom_traits_3.h
TDA/src/CGAL/Triangulation_vertex_base_3.h
TDA/src/CGAL/Default.h
TDA/src/CGAL/Point_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/Complexity_tags.h
TDA/src/CGAL/Handle_for.h
TDA/src/CGAL/In_place_list.h
TDA/src/CGAL/Lazy_exact_nt.h
TDA/src/CGAL/Ray_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/Fourtuple.h
TDA/src/CGAL/copy_n.h
TDA/src/CGAL/Dimension.h
TDA/src/CGAL/NewKernel_d
TDA/src/CGAL/NewKernel_d/Kernel_3_interface.h
TDA/src/CGAL/NewKernel_d/Define_kernel_types.h
TDA/src/CGAL/NewKernel_d/functor_tags.h
TDA/src/CGAL/NewKernel_d/Dimension_base.h
TDA/src/CGAL/NewKernel_d/functor_properties.h
TDA/src/CGAL/NewKernel_d/Kernel_d_interface.h
TDA/src/CGAL/NewKernel_d/Vector
TDA/src/CGAL/NewKernel_d/Vector/mix.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_points_from_vectors.h
TDA/src/CGAL/NewKernel_d/Vector/avx4.h
TDA/src/CGAL/NewKernel_d/Vector/array.h
TDA/src/CGAL/NewKernel_d/Vector/vector.h
TDA/src/CGAL/NewKernel_d/Vector/v2int.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim_internal.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_points.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_iterator_to_vectors.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim.h
TDA/src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_vectors_from_vectors.h
TDA/src/CGAL/NewKernel_d/Vector/sse2.h
TDA/src/CGAL/NewKernel_d/Wrapper
TDA/src/CGAL/NewKernel_d/Wrapper/Hyperplane_d.h
TDA/src/CGAL/NewKernel_d/Wrapper/Point_d.h
TDA/src/CGAL/NewKernel_d/Wrapper/Vector_d.h
TDA/src/CGAL/NewKernel_d/Wrapper/Sphere_d.h
TDA/src/CGAL/NewKernel_d/Wrapper/Ref_count_obj.h
TDA/src/CGAL/NewKernel_d/Wrapper/Cartesian_wrap.h
TDA/src/CGAL/NewKernel_d/Wrapper/Segment_d.h
TDA/src/CGAL/NewKernel_d/Cartesian_LA_base.h
TDA/src/CGAL/NewKernel_d/Cartesian_complete.h
TDA/src/CGAL/NewKernel_d/Cartesian_LA_functors.h
TDA/src/CGAL/NewKernel_d/Cartesian_static_filters.h
TDA/src/CGAL/NewKernel_d/utils.h
TDA/src/CGAL/NewKernel_d/Types
TDA/src/CGAL/NewKernel_d/Types/Hyperplane.h
TDA/src/CGAL/NewKernel_d/Types/Line.h
TDA/src/CGAL/NewKernel_d/Types/Aff_transformation.h
TDA/src/CGAL/NewKernel_d/Types/Ray.h
TDA/src/CGAL/NewKernel_d/Types/Segment.h
TDA/src/CGAL/NewKernel_d/Types/Sphere.h
TDA/src/CGAL/NewKernel_d/Types/Iso_box.h
TDA/src/CGAL/NewKernel_d/Kernel_object_converter.h
TDA/src/CGAL/NewKernel_d/Cartesian_per_dimension.h
TDA/src/CGAL/NewKernel_d/Cartesian_filter_NT.h
TDA/src/CGAL/NewKernel_d/KernelD_converter.h
TDA/src/CGAL/NewKernel_d/Filtered_predicate2.h
TDA/src/CGAL/NewKernel_d/Cartesian_filter_K.h
TDA/src/CGAL/NewKernel_d/Kernel_2_interface.h
TDA/src/CGAL/NewKernel_d/Lazy_cartesian.h
TDA/src/CGAL/NewKernel_d/static_int.h
TDA/src/CGAL/NewKernel_d/LA_eigen
TDA/src/CGAL/NewKernel_d/LA_eigen/LA.h
TDA/src/CGAL/NewKernel_d/LA_eigen/constructors.h
TDA/src/CGAL/NewKernel_d/store_kernel.h
TDA/src/CGAL/NewKernel_d/Cartesian_change_FT.h
TDA/src/CGAL/NewKernel_d/function_objects_cartesian.h
TDA/src/CGAL/NewKernel_d/Cartesian_base.h
TDA/src/CGAL/NewKernel_d/Coaffine.h
TDA/src/CGAL/utils.h
TDA/src/CGAL/Hilbert_sort_middle_d.h
TDA/src/CGAL/auto_link
TDA/src/CGAL/auto_link/TAUCS.h
TDA/src/CGAL/auto_link/CORE.h
TDA/src/CGAL/auto_link/CGAL.h
TDA/src/CGAL/auto_link/ImageIO.h
TDA/src/CGAL/auto_link/auto_link.h
TDA/src/CGAL/auto_link/LAPACK.h
TDA/src/CGAL/Ray_2_Triangle_2_intersection.h
TDA/src/CGAL/number_utils_classes.h
TDA/src/CGAL/Triangle_3_Point_3_do_intersect.h
TDA/src/CGAL/squared_distance_3.h
TDA/src/CGAL/Tetrahedron_3.h
TDA/src/CGAL/Kernel
TDA/src/CGAL/Kernel/interface_macros.h
TDA/src/CGAL/Kernel/global_functions_2.h
TDA/src/CGAL/Kernel/Type_equality_wrapper.h
TDA/src/CGAL/Kernel/Return_base_tag.h
TDA/src/CGAL/Kernel/function_objects.h
TDA/src/CGAL/Kernel/mpl.h
TDA/src/CGAL/Kernel/global_functions_3.h
TDA/src/CGAL/Kernel/Same_uncertainty.h
TDA/src/CGAL/Kernel/solve.h
TDA/src/CGAL/Kernel/Wutils.h
TDA/src/CGAL/Kernel/global_functions_internal_2.h
TDA/src/CGAL/Kernel/Type_mapper.h
TDA/src/CGAL/Kernel/global_functions.h
TDA/src/CGAL/Kernel/Dimension_utils.h
TDA/src/CGAL/Kernel/global_functions_internal_3.h
TDA/src/CGAL/Triangulation_face.h
TDA/src/CGAL/NT_converter.h
TDA/src/CGAL/basic.h
TDA/src/CGAL/Triangle_2_Ray_2_intersection.h
TDA/src/CGAL/Gmpzf.h
TDA/src/CGAL/Regular_triangulation_3.h
TDA/src/CGAL/Kernel_traits.h
TDA/src/CGAL/Hilbert_sort_middle_2.h
TDA/src/CGAL/squared_distance_2_1.h
TDA/src/CGAL/Real_embeddable_traits.h
TDA/src/CGAL/Line_2.h
TDA/src/CGAL/export
TDA/src/CGAL/export/CORE.h
TDA/src/CGAL/export/CGAL.h
TDA/src/CGAL/export/ImageIO.h
TDA/src/CGAL/export/helpers.h
TDA/src/CGAL/Chinese_remainder_traits.h
TDA/src/CGAL/Handle_hash_function.h
TDA/src/CGAL/Ray_2_Ray_2_intersection.h
TDA/src/CGAL/Cartesian_converter.h
TDA/src/CGAL/Alpha_shape_3.h
TDA/src/CGAL/IO
TDA/src/CGAL/IO/File_writer_VRML_2.h
TDA/src/CGAL/IO/Dxf_stream.h
TDA/src/CGAL/IO/File_writer_inventor.h
TDA/src/CGAL/IO/Arr_text_formatter.h
TDA/src/CGAL/IO/read_xyz_points.h
TDA/src/CGAL/IO/Complex_2_in_triangulation_3_file_writer.h
TDA/src/CGAL/IO/generic_print_polyhedron.h
TDA/src/CGAL/IO/Complex_3_in_triangulation_3_to_vtk.h
TDA/src/CGAL/IO/Geomview_stream.h
TDA/src/CGAL/IO/Arrangement_2_reader.h
TDA/src/CGAL/IO/Dxf_reader_doubles.h
TDA/src/CGAL/IO/output_surface_facets_to_triangle_soup.h
TDA/src/CGAL/IO/alpha_shape_geomview_ostream_3.h
TDA/src/CGAL/IO/Arr_with_history_text_formatter.h
TDA/src/CGAL/IO/Complex_2_in_triangulation_3_to_vtk.h
TDA/src/CGAL/IO/Writer_OFF.h
TDA/src/CGAL/IO/Nef_polyhedron_S2_OGLUT_stream.h
TDA/src/CGAL/IO/VRML_2_ostream.h
TDA/src/CGAL/IO/io_tags.h
TDA/src/CGAL/IO/binary_file_io.h
TDA/src/CGAL/IO/Nef_polyhedron_iostream_S2.h
TDA/src/CGAL/IO/Triangulation_geomview_ostream_2.h
TDA/src/CGAL/IO/Complex_2_in_triangulation_3_polyhedron_builder.h
TDA/src/CGAL/IO/File_tetgen.h
TDA/src/CGAL/IO/Polyhedron_scan_OFF.h
TDA/src/CGAL/IO/Nef_polyhedron_iostream_3.h
TDA/src/CGAL/IO/File_scanner_OFF.h
TDA/src/CGAL/IO/Color_impl.h
TDA/src/CGAL/IO/read_off_points.h
TDA/src/CGAL/IO/Istream_iterator.h
TDA/src/CGAL/IO/Alpha_shape_3_VRML_2_ostream.h
TDA/src/CGAL/IO/Verbose_ostream.h
TDA/src/CGAL/IO/Dxf_reader.h
TDA/src/CGAL/IO/print_wavefront.h
TDA/src/CGAL/IO/Polyhedron_VRML_2_ostream.h
TDA/src/CGAL/IO/Dxf_bsop_reader.h
TDA/src/CGAL/IO/Triangulation_geomview_ostream_3.h
TDA/src/CGAL/IO/VRML_1_ostream.h
TDA/src/CGAL/IO/Geomview_stream_impl.h
TDA/src/CGAL/IO/Arr_with_history_iostream.h
TDA/src/CGAL/IO/Arrangement_2_writer.h
TDA/src/CGAL/IO/generic_copy_OFF.h
TDA/src/CGAL/IO/Polyhedron_iostream.h
TDA/src/CGAL/IO/Generic_writer.h
TDA/src/CGAL/IO/Arr_with_history_2_writer.h
TDA/src/CGAL/IO/Fig_stream_Conic_arc_2.h
TDA/src/CGAL/IO/Arr_with_history_2_reader.h
TDA/src/CGAL/IO/Polyhedron_inventor_ostream.h
TDA/src/CGAL/IO/Polyhedron_geomview_ostream.h
TDA/src/CGAL/IO/write_xyz_points.h
TDA/src/CGAL/IO/print_VRML_1.h
TDA/src/CGAL/IO/Fig_stream.h
TDA/src/CGAL/IO/Inventor_ostream.h
TDA/src/CGAL/IO/Dxf_variant_reader.h
TDA/src/CGAL/IO/Color.h
TDA/src/CGAL/IO/Gps_iostream.h
TDA/src/CGAL/IO/print_OFF.h
TDA/src/CGAL/IO/io.h
TDA/src/CGAL/IO/File_writer_wavefront.h
TDA/src/CGAL/IO/print_inventor.h
TDA/src/CGAL/IO/Triangulation_ps_stream.h
TDA/src/CGAL/IO/File_header_extended_OFF.h
TDA/src/CGAL/IO/Polyhedron_VRML_1_ostream.h
TDA/src/CGAL/IO/File_poly.h
TDA/src/CGAL/IO/File_writer_OFF.h
TDA/src/CGAL/IO/print_VRML_2.h
TDA/src/CGAL/IO/File_header_OFF.h
TDA/src/CGAL/IO/write_off_points.h
TDA/src/CGAL/IO/Nef_polyhedron_2_PS_stream.h
TDA/src/CGAL/IO/io_impl.h
TDA/src/CGAL/IO/Tee_for_output_iterator.h
TDA/src/CGAL/IO/Scanner_OFF.h
TDA/src/CGAL/IO/File_maya.h
TDA/src/CGAL/IO/Arr_iostream.h
TDA/src/CGAL/IO/output_surface_facets_to_polyhedron.h
TDA/src/CGAL/IO/scan_OFF.h
TDA/src/CGAL/IO/Ostream_iterator.h
TDA/src/CGAL/IO/File_binary_mesh_3.h
TDA/src/CGAL/IO/Dxf_writer.h
TDA/src/CGAL/IO/File_medit.h
TDA/src/CGAL/Simple_homogeneous.h
TDA/src/CGAL/type_traits.h
TDA/src/CGAL/Point_2_Triangle_2_intersection.h
TDA/src/CGAL/Handle_with_policy.h
TDA/src/CGAL/intersection_3.h
TDA/src/CGAL/Triangulation_full_cell.h
TDA/src/CGAL/circulator_bases.h
TDA/src/CGAL/Object.h
TDA/src/CGAL/GMP
TDA/src/CGAL/GMP/Gmpzf_type.h
TDA/src/CGAL/GMP/Gmpq_type.h
TDA/src/CGAL/GMP/Gmpz_type.h
TDA/src/CGAL/GMP/Gmpfr_type_static.h
TDA/src/CGAL/GMP/Gmpfr_type.h
TDA/src/CGAL/circulator.h
TDA/src/CGAL/Exact_predicates_inexact_constructions_kernel.h
TDA/src/CGAL/Hilbert_sort_3.h
TDA/src/CGAL/aff_transformation_tags_impl.h
TDA/src/CGAL/Algebraic_structure_traits.h
TDA/src/CGAL/distance_predicates_3.h
TDA/src/CGAL/intersections.h
TDA/src/CGAL/FPU.h
TDA/src/CGAL/Filtered_predicate.h
TDA/src/CGAL/Spatial_sort_traits_adapter_3.h
TDA/src/CGAL/Fixed_alpha_shape_vertex_base_3.h
TDA/src/CGAL/Uncertain.h
TDA/src/CGAL/basic_constructions_3.h
TDA/src/CGAL/functions_on_enums.h
TDA/src/CGAL/Linear_algebraCd.h
TDA/src/CGAL/Alpha_shape_euclidean_traits_3.h
TDA/src/CGAL/constructions_d.h
TDA/src/CGAL/Bbox_2.h
TDA/src/CGAL/TDS_full_cell_mirror_storage_policy.h
TDA/src/CGAL/Delaunay_triangulation.h
TDA/src/CGAL/Alpha_shape_vertex_base_3.h
TDA/src/CGAL/wmult.h
TDA/src/CGAL/Delaunay_triangulation_3.h
TDA/src/CGAL/Filtered_kernel.h
TDA/src/CGAL/Interval_traits.h
TDA/src/CGAL/Triangle_3.h
TDA/src/CGAL/Handle_for_virtual.h
TDA/src/CGAL/Segment_2_Line_2_intersection.h
TDA/src/CGAL/Interval_arithmetic.h
TDA/src/CGAL/Polygon_2
TDA/src/CGAL/Polygon_2/polygon_assertions.h
TDA/src/CGAL/Polygon_2/Polygon_2_simplicity.h
TDA/src/CGAL/Polygon_2/Polygon_2_algorithms_impl.h
TDA/src/CGAL/squared_distance_utils.h
TDA/src/CGAL/Fixed_alpha_shape_3.h
TDA/src/CGAL/Triangulation_hierarchy_vertex_base_3.h
TDA/src/CGAL/Circulator_on_node.h
TDA/src/CGAL/Profile_counter.h
TDA/src/CGAL/boost
TDA/src/CGAL/boost/iterator
TDA/src/CGAL/boost/iterator/transform_iterator.hpp
TDA/src/CGAL/boost/iterator/counting_iterator.hpp
TDA/src/CGAL/Random.h
TDA/src/CGAL/Plane_3.h
TDA/src/CGAL/Ray_3.h
TDA/src/CGAL/float.h
TDA/src/CGAL/Point_2_Ray_2_intersection.h
TDA/src/CGAL/Point_2.h
TDA/src/CGAL/MP_Float_arithmetic_kernel.h
TDA/src/CGAL/Quotient.h
TDA/src/CGAL/intersection_2_1.h
TDA/src/CGAL/simple_transformations_d.h
TDA/src/CGAL/assertions.cpp
TDA/src/CGAL/Hilbert_sort_base.h
TDA/src/CGAL/Triangulation_data_structure.h
TDA/src/CGAL/Triangulation_utils_3.h
TDA/src/CGAL/Triangle_2_Segment_2_intersection.h
TDA/src/CGAL/Coercion_traits.h
TDA/src/CGAL/Sqrt_extension.h
TDA/src/CGAL/MP_Float.h
TDA/src/CGAL/Triangulation_3.h
TDA/src/CGAL/Triangulation_simplex_3.h
TDA/src/CGAL/Segment_3.h
TDA/src/CGAL/ConicCPA2.h
TDA/src/CGAL/Compact_container.h
TDA/src/CGAL/Projection_traits_xz_3.h
TDA/src/CGAL/ConicHPA2.h
TDA/src/CGAL/Iterator_transform.h
TDA/src/CGAL/exceptions.h
TDA/src/CGAL/Gmp_coercion_traits.h
TDA/src/CGAL/mpz_class.h
TDA/src/CGAL/Iso_rectangle_2_Iso_rectangle_2_intersection.h
TDA/src/CGAL/double.h
TDA/src/CGAL/Triangle_3_Line_3_do_intersect.h
TDA/src/CGAL/long_long.h
TDA/src/CGAL/long_double.h
TDA/src/CGAL/Triangulation_vertex_base_with_info_3.h
TDA/src/CGAL/Random_access_adaptor.h
TDA/src/CGAL/Threetuple.h
TDA/src/CGAL/Aff_transformation_3.h
TDA/src/CGAL/Ray_2_Segment_2_intersection.h
TDA/src/CGAL/multiset_assertions.h
TDA/src/CGAL/Triangulation_cell_base_with_info_3.h
TDA/src/CGAL/Join_input_iterator.h
TDA/src/CGAL/rational_rotation.h
TDA/src/CGAL/Spatial_sort_traits_adapter_d.h
TDA/src/CGAL/sse2.h
TDA/src/CGAL/Hilbert_policy_tags.h
TDA/src/CGAL/Triangle_3_Plane_3_do_intersect.h
TDA/src/CGAL/Straight_2.h
TDA/src/CGAL/tuple.h
TDA/src/CGAL/Modular_arithmetic
TDA/src/CGAL/Modular_arithmetic/Residue_type.h
TDA/src/CGAL/number_type_basic.h
TDA/src/CGAL/Intersection_traits_2.h
TDA/src/CGAL/aff_transformation_tags.h
TDA/src/CGAL/Twotuple.h
TDA/src/CGAL/squared_distance_2.h
TDA/src/CGAL/Epick_d.h
TDA/src/CGAL/kernel_config.h
TDA/src/CGAL/Regular_triangulation_euclidean_traits_3.h
TDA/src/CGAL/transforming_pair_iterator.h
TDA/src/CGAL/Triangle_3_Triangle_3_do_intersect.h
TDA/src/CGAL/Flattening_iterator.h
TDA/src/CGAL/iterator.h
TDA/src/CGAL/Concatenate_iterator.h
TDA/src/CGAL/Handle.h
TDA/src/CGAL/Iterator_project.h
TDA/src/CGAL/Vector_3.h
TDA/src/CGAL/gmpxx.h
TDA/src/CGAL/Triangle_3_Segment_3_do_intersect.h
TDA/src/CGAL/Weighted_point.h
TDA/src/CGAL/Projection_traits_xy_3.h
TDA/src/CGAL/hilbert_sort.h
TDA/src/CGAL/Modifiable_priority_queue.h
TDA/src/CGAL/Intersection_traits.h
TDA/src/CGAL/Inverse_index.h
TDA/src/CGAL/Triangulation.h
TDA/src/CGAL/Circle_2_Circle_2_intersection.h
TDA/src/CGAL/Direction_3.h
TDA/src/CGAL/Cartesian_d.h
TDA/src/CGAL/Algebraic_extension_traits.h
TDA/src/CGAL/assertions_impl.h
TDA/src/CGAL/Modular_traits.h
TDA/src/CGAL/user_classes.h
TDA/src/CGAL/intersections_d.h
TDA/src/CGAL/Fixed_alpha_shape_cell_base_3.h
TDA/src/CGAL/Segment_2_Triangle_2_intersection.h
TDA/src/CGAL/Triangle_2_Line_2_intersection.h
TDA/src/CGAL/Spatial_lock_grid_3.h
TDA/src/CGAL/Enum_converter.h
TDA/src/geometry
TDA/src/geometry/distances.h
TDA/src/geometry/weighted-cechdistance.h
TDA/src/geometry/simulator.h
TDA/src/geometry/linear-kernel.h
TDA/src/geometry/rational-function.h
TDA/src/geometry/l2distance.h
TDA/src/geometry/NOTES
TDA/src/geometry/linalg.hpp
TDA/src/geometry/kinetic-sort.h
TDA/src/geometry/simulator.hpp
TDA/src/geometry/polynomial.hpp
TDA/src/geometry/distances.hpp
TDA/src/geometry/euclidean.h
TDA/src/geometry/linalg.h
TDA/src/geometry/weighted-l2distance.h
TDA/src/geometry/number-traits.h
TDA/src/geometry/polynomial.h
TDA/src/geometry/euclidean.hpp
TDA/src/geometry/Arbitdistance.h
TDA/src/boost
TDA/src/boost/serialization
TDA/src/boost/serialization/binary_object.hpp
TDA/src/gudhi
TDA/src/gudhi/Points_off_io.h
TDA/src/gudhi/Persistent_cohomology
TDA/src/gudhi/Persistent_cohomology/Persistent_cohomology_column.h
TDA/src/gudhi/Persistent_cohomology/Field_Zp.h
TDA/src/gudhi/Persistent_cohomology/Multi_field.h
TDA/src/gudhi/Debug_utils.h
TDA/src/gudhi/distance_functions.h
TDA/src/gudhi/reader_utils.h
TDA/src/gudhi/Off_reader.h
TDA/src/gudhi/Alpha_complex.h
TDA/src/gudhi/Simplex_tree.h
TDA/src/gudhi/graph_simplicial_complex.h
TDA/src/gudhi/Simple_object_pool.h
TDA/src/gudhi/Simplex_tree
TDA/src/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h
TDA/src/gudhi/Simplex_tree/Simplex_tree_iterators.h
TDA/src/gudhi/Simplex_tree/Simplex_tree_siblings.h
TDA/src/gudhi/Simplex_tree/indexing_tag.h
TDA/src/gudhi/Persistent_cohomology.h
TDA/src/diag.cpp
TDA/src/phat
TDA/src/phat/boundary_matrix.h
TDA/src/phat/helpers
TDA/src/phat/helpers/dualize.h
TDA/src/phat/helpers/misc.h
TDA/src/phat/helpers/thread_local_storage.h
TDA/src/phat/algorithms
TDA/src/phat/algorithms/row_reduction.h
TDA/src/phat/algorithms/chunk_reduction.h
TDA/src/phat/algorithms/spectral_sequence_reduction.h
TDA/src/phat/algorithms/twist_reduction.h
TDA/src/phat/algorithms/standard_reduction.h
TDA/src/phat/representations
TDA/src/phat/representations/vector_heap.h
TDA/src/phat/representations/bit_tree_pivot_column.h
TDA/src/phat/representations/vector_set.h
TDA/src/phat/representations/abstract_pivot_column.h
TDA/src/phat/representations/vector_list.h
TDA/src/phat/representations/vector_vector.h
TDA/src/phat/representations/heap_pivot_column.h
TDA/src/phat/representations/full_pivot_column.h
TDA/src/phat/representations/sparse_pivot_column.h
TDA/src/phat/compute_persistence_pairs.h
TDA/src/phat/persistence_pairs.h
TDA/src/RcppExports.cpp
TDA/src/topology
TDA/src/topology/lsvineyard.h
TDA/src/topology/lsvineyard.hpp
TDA/src/topology/conesimplex.h
TDA/src/topology/complex-traits.h
TDA/src/topology/dynamic-persistence.hpp
TDA/src/topology/weighted-rips.h
TDA/src/topology/rips.hpp
TDA/src/topology/cycles.h
TDA/src/topology/persistence-diagram.h
TDA/src/topology/filtration.h
TDA/src/topology/chain.hpp
TDA/src/topology/static-persistence.hpp
TDA/src/topology/image-zigzag-persistence.h
TDA/src/topology/order.h
TDA/src/topology/conesimplex.hpp
TDA/src/topology/static-persistence.h
TDA/src/topology/filtration.hpp
TDA/src/topology/cohomology-persistence.h
TDA/src/topology/simplex.h
TDA/src/topology/chain.h
TDA/src/topology/field-arithmetic.h
TDA/src/topology/simplex.hpp
TDA/src/topology/lowerstarfiltration.h
TDA/src/topology/image-zigzag-persistence.hpp
TDA/src/topology/rips.h
TDA/src/topology/persistence-diagram.hpp
TDA/src/topology/dynamic-persistence.h
TDA/src/topology/zigzag-persistence.h
TDA/src/topology/vineyard.h
TDA/src/gmpxx.h
TDA/src/utilities
TDA/src/utilities/counter.h
TDA/src/utilities/circular_list.h
TDA/src/utilities/orderlist.h
TDA/src/utilities/log.h
TDA/src/utilities/binaryheap.h
TDA/src/utilities/memory.h
TDA/src/utilities/timer.h
TDA/src/utilities/indirect.h
TDA/src/utilities/eventqueue.h
TDA/src/utilities/containers.h
TDA/src/utilities/consistencylist.hpp
TDA/src/utilities/types.h
TDA/src/utilities/consistencylist.h
TDA/src/utilities/munkres
TDA/src/utilities/munkres/munkres.h
TDA/src/utilities/munkres/matrix.hpp
TDA/src/utilities/munkres/munkres.cpp
TDA/src/utilities/munkres/matrix.h
TDA/src/utilities/property-maps.h
TDA/NAMESPACE
TDA/NEWS
TDA/R
TDA/R/alphaComplexDiag.R
TDA/R/findKtree.R
TDA/R/maxPersistence.R
TDA/R/plot.maxPersistence.R
TDA/R/gridDiag.R
TDA/R/plotRule.R
TDA/R/hausdInterval.R
TDA/R/summary.diagram.R
TDA/R/ripsDiag.R
TDA/R/kernelDist.R
TDA/R/print.clusterTree.R
TDA/R/rMultinom.R
TDA/R/bootstrapBand.R
TDA/R/sphereUnif.R
TDA/R/landscape.R
TDA/R/distFct.R
TDA/R/print.summary.maxPersistence.R
TDA/R/summary.maxPersistence.R
TDA/R/circleUnif.R
TDA/R/bootstrapDiagram.R
TDA/R/wasserstein.R
TDA/R/clusterTree.R
TDA/R/multipBootstrap.R
TDA/R/print.summary.diagram.R
TDA/R/kde.R
TDA/R/gridBy.R
TDA/R/RcppExports.R
TDA/R/knnDE.R
TDA/R/torusUnif.R
TDA/R/siloF.R
TDA/R/print.maxPersistence.R
TDA/R/plot.clusterTree.R
TDA/R/dtm.R
TDA/R/silhouette.R
TDA/R/bottleneck.R
TDA/R/plot.diagram.R
TDA/R/print.diagram.R
TDA/R/alphaShapeDiag.R
TDA/vignettes
TDA/vignettes/article.Rnw
TDA/vignettes/biblio.bib
TDA/MD5
TDA/build
TDA/build/vignette.rds
TDA/DESCRIPTION
TDA/man
TDA/man/TDA-internal.Rd
TDA/man/gridDiag.Rd
TDA/man/wasserstein.Rd
TDA/man/TDA-package.Rd
TDA/man/bootstrapBand.Rd
TDA/man/torusUnif.Rd
TDA/man/silhouette.Rd
TDA/man/plot.maxPersistence.Rd
TDA/man/dtm.Rd
TDA/man/sphereUnif.Rd
TDA/man/summary.diagram.Rd
TDA/man/plot.clusterTree.Rd
TDA/man/distFct.Rd
TDA/man/ripsDiag.Rd
TDA/man/alphaComplexDiag.Rd
TDA/man/kernelDist.Rd
TDA/man/plot.diagram.Rd
TDA/man/multipBootstrap.Rd
TDA/man/circleUnif.Rd
TDA/man/clusterTree.Rd
TDA/man/kde.Rd
TDA/man/maxPersistence.Rd
TDA/man/hausdInterval.Rd
TDA/man/landscape.Rd
TDA/man/bootstrapDiagram.Rd
TDA/man/knnDE.Rd
TDA/man/alphaShapeDiag.Rd
TDA/man/bottleneck.Rd