TDA: Statistical Tools for Topological Data Analysis
Version 1.5.1

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries GUDHI, Dionysus, and PHAT.

Browse man pages Browse package API and functions Browse package files

AuthorBrittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Date of publication2017-04-27 15:44:36 UTC
MaintainerJisu Kim <jisuk1@andrew.cmu.edu>
LicenseGPL-3
Version1.5.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("TDA")

Man pages

alphaComplexDiag: Alpha Complex Persistence Diagram
alphaShapeDiag: Persistence Diagram of Alpha Shape in 3d
bootstrapBand: Bootstrap Confidence Band
bootstrapDiagram: Bootstrapped Confidence Set for a Persistence Diagram, using...
bottleneck: Bottleneck distance between two persistence diagrams
circleUnif: Uniform Sample From The Circle
clusterTree: Density clustering: the cluster tree
distFct: Distance function
dtm: Distance to Measure Function
gridDiag: Persistence Diagram of a function over a Grid
hausdInterval: Subsampling Confidence Interval for the Hausdorff Distance...
kde: Kernel Density Estimator over a Grid of Points
kernelDist: Kernel distance over a Grid of Points
knnDE: k Nearest Neighbors Density Estimator over a Grid of Points
landscape: The Persistence Landscape Function
maxPersistence: Maximal Persistence Method
multipBootstrap: Multiplier Bootstrap for Persistence Landscapes and...
plot.clusterTree: Plots the Cluster Tree
plot.diagram: Plot the Persistence Diagram
plot.maxPersistence: Summary plot for the maxPersistence function
ripsDiag: Rips Persistence Diagram
silhouette: The Persistence Silhouette Function
sphereUnif: Uniform Sample From The Sphere S^d
summary.diagram: 'print' and 'summary' for 'diagram'
TDA-internal: Internal TDA functions
TDA-package: Statistical Tools for Topological Data Analysis
torusUnif: Uniform Sample From The 3D Torus
wasserstein: Wasserstein distance between two persistence diagrams

Functions

AlphaComplexDiagGUDHI Man page Source code
AlphaShapeDiagGUDHI Man page Source code
Bottleneck Man page Source code
Dtm Man page Source code
DtmWeight Man page Source code
GridDiag Man page Source code
Kde Man page Source code
KdeDist Man page Source code
RipsDiag Man page Source code
TDA Man page
TDA-package Man page
Wasserstein Man page Source code
alphaComplexDiag Man page
alphaShapeDiag Man page Source code
bootstrapBand Man page Source code
bootstrapDiagram Man page Source code
bottleneck Man page Source code
circleUnif Man page Source code
clusterTree Man page Source code
distFct Man page Source code
dtm Man page Source code
findKtree Man page Source code
gridBy Man page Source code
gridDiag Man page Source code
hausdInterval Man page Source code
kde Man page Source code
kernelDist Man page Source code
knnDE Man page Source code
landscape Man page Source code
maxPersistence Man page Source code
multipBootstrap Man page Source code
plot.clusterTree Man page Source code
plot.diagram Man page Source code
plot.maxPersistence Man page Source code
plotRule Man page Source code
print.clusterTree Man page Source code
print.diagram Man page Source code
print.maxPersistence Man page Source code
print.summary.diagram Man page Source code
print.summary.maxPersistence Man page Source code
rMultinom Man page Source code
ripsDiag Man page Source code
silhouette Man page Source code
siloF Man page Source code
sphereUnif Man page Source code
summary.diagram Man page Source code
summary.maxPersistence Man page Source code
torusUnif Man page Source code
wasserstein Man page Source code

Files

inst
inst/doc
inst/doc/article.R
inst/doc/article.pdf
inst/doc/article.Rnw
src
src/Makevars
src/tdautils
src/tdautils/ripsArbit.h
src/tdautils/typecastUtils.h
src/tdautils/kernelUtils.h
src/tdautils/gudhiUtils.h
src/tdautils/ripsL2.h
src/tdautils/cgalUtils.h
src/tdautils/phatUtils.h
src/tdautils/gridUtils.h
src/tdautils/dionysusUtils.h
src/CGAL
src/CGAL/Sixtuple.h
src/CGAL/Polygon_2_algorithms.h
src/CGAL/kernel_to_kernel.h
src/CGAL/Conic_2.h
src/CGAL/Triangle_2.h
src/CGAL/Sphere_3.h
src/CGAL/Regular_triangulation_cell_base_with_weighted_circumcenter_3.h
src/CGAL/Mpzf.h
src/CGAL/Bbox_3.h
src/CGAL/Segment_2_Iso_rectangle_2_intersection.h
src/CGAL/utils_classes.h
src/CGAL/Arithmetic_kernel
src/CGAL/Arithmetic_kernel/Arithmetic_kernel_base.h
src/CGAL/Rational_traits.h
src/CGAL/triangulation_assertions.h
src/CGAL/Line_2_Triangle_2_intersection.h
src/CGAL/Origin_impl.h
src/CGAL/is_convertible.h
src/CGAL/bbox_intersection_3.h
src/CGAL/Point_2_Segment_2_intersection.h
src/CGAL/convert_to_bfi.h
src/CGAL/mpq_class.h
src/CGAL/Random_impl.h
src/CGAL/Triangle_2_Triangle_2_do_intersect.h
src/CGAL/int.h
src/CGAL/Hilbert_sort_median_2.h
src/CGAL/spatial_sort.h
src/CGAL/Homogeneous_converter.h
src/CGAL/Location_policy.h
src/CGAL/Circle_3.h
src/CGAL/Triangulation_structural_filtering_traits.h
src/CGAL/Triangle_3_Triangle_3_intersection.h
src/CGAL/Gmpq.h
src/CGAL/Hilbert_sort_d.h
src/CGAL/Triangle_3_Tetrahedron_3_do_intersect.h
src/CGAL/intersection_2_2.h
src/CGAL/Triangulation_cell_base_with_circumcenter_3.h
src/CGAL/Point_2_Line_2_intersection.h
src/CGAL/Exact_predicates_exact_constructions_kernel_with_sqrt.h
src/CGAL/Iso_rectangle_2.h
src/CGAL/Multiscale_sort.h
src/CGAL/Intersections_3
src/CGAL/Intersections_3/intersection_3_1_impl.h
src/CGAL/is_iterator.h
src/CGAL/use.h
src/CGAL/Scalar_factor_traits.h
src/CGAL/Random_access_value_adaptor.h
src/CGAL/Triangle_3_Ray_3_do_intersect.h
src/CGAL/intersection_2.h
src/CGAL/squared_distance_2_2.h
src/CGAL/gmp.h
src/CGAL/extended_euclidean_algorithm.h
src/CGAL/Triangulation_hierarchy_3.h
src/CGAL/enum.h
src/CGAL/Time_stamper.h
src/CGAL/Lazy.h
src/CGAL/basic_constructions_2.h
src/CGAL/CC_safe_handle.h
src/CGAL/Triangulation_utils_2.h
src/CGAL/Circle_2.h
src/CGAL/Nested_iterator.h
src/CGAL/Filtered_kernel_fwd.h
src/CGAL/kernel_assertions.h
src/CGAL/Kernel_checker.h
src/CGAL/Quotient_fwd.h
src/CGAL/Gmpz.h
src/CGAL/cartesian_homogeneous_conversion.h
src/CGAL/Triangle_2_Iso_rectangle_2_intersection.h
src/CGAL/Kernel_d
src/CGAL/Kernel_d/Kernel_classesCd.h
src/CGAL/Kernel_d/HyperplaneHd.h
src/CGAL/Kernel_d/Hyperplane_d.h
src/CGAL/Kernel_d/Pair_d.h
src/CGAL/Kernel_d/HyperplaneCd_impl.h
src/CGAL/Kernel_d/function_objectsCd.h
src/CGAL/Kernel_d/Line_d_impl.h
src/CGAL/Kernel_d/HyperplaneHd_impl.h
src/CGAL/Kernel_d/DirectionHd.h
src/CGAL/Kernel_d/function_objects.h
src/CGAL/Kernel_d/PVDHAHd_impl.h
src/CGAL/Kernel_d/Point_d.h
src/CGAL/Kernel_d/Vector_d.h
src/CGAL/Kernel_d/Vector__.h
src/CGAL/Kernel_d/Line_d.h
src/CGAL/Kernel_d/PointCd.h
src/CGAL/Kernel_d/Kernel_classesHd.h
src/CGAL/Kernel_d/PointHd.h
src/CGAL/Kernel_d/PointCd_impl.h
src/CGAL/Kernel_d/Linear_algebraHd_impl.h
src/CGAL/Kernel_d/function_objectsHd.h
src/CGAL/Kernel_d/Direction_d.h
src/CGAL/Kernel_d/Aff_transformation_d.h
src/CGAL/Kernel_d/VectorCd.h
src/CGAL/Kernel_d/Linear_algebraCd_impl.h
src/CGAL/Kernel_d/simple_objects.h
src/CGAL/Kernel_d/VectorHd_impl.h
src/CGAL/Kernel_d/DirectionHd_impl.h
src/CGAL/Kernel_d/VectorCd_impl.h
src/CGAL/Kernel_d/DirectionCd_impl.h
src/CGAL/Kernel_d/Ray_d.h
src/CGAL/Kernel_d/debug.h
src/CGAL/Kernel_d/Aff_transformationHd.h
src/CGAL/Kernel_d/Interface_classes.h
src/CGAL/Kernel_d/PVDHACd_impl.h
src/CGAL/Kernel_d/VectorHd.h
src/CGAL/Kernel_d/Sphere_d.h
src/CGAL/Kernel_d/DirectionCd.h
src/CGAL/Kernel_d/Aff_transformationCd.h
src/CGAL/Kernel_d/intersection_objectsCd.h
src/CGAL/Kernel_d/Iso_box_d.h
src/CGAL/Kernel_d/Matrix__.h
src/CGAL/Kernel_d/intersection_objectsHd.h
src/CGAL/Kernel_d/intersection_objects_d.h
src/CGAL/Kernel_d/PointHd_impl.h
src/CGAL/Kernel_d/Segment_d.h
src/CGAL/Kernel_d/Tuple_d.h
src/CGAL/Kernel_d/Cartesian_const_iterator_d.h
src/CGAL/Kernel_d/HyperplaneCd.h
src/CGAL/Cartesian
src/CGAL/Cartesian/Aff_transformation_rep_3.h
src/CGAL/Cartesian/Triangle_2.h
src/CGAL/Cartesian/Sphere_3.h
src/CGAL/Cartesian/Circle_3.h
src/CGAL/Cartesian/Iso_rectangle_2.h
src/CGAL/Cartesian/basic_constructions_2.h
src/CGAL/Cartesian/Circle_2.h
src/CGAL/Cartesian/Scaling_rep_2.h
src/CGAL/Cartesian/Direction_2.h
src/CGAL/Cartesian/Aff_transformation_2.h
src/CGAL/Cartesian/function_objects.h
src/CGAL/Cartesian/Vector_2.h
src/CGAL/Cartesian/Scaling_rep_3.h
src/CGAL/Cartesian/Segment_2.h
src/CGAL/Cartesian/solve_3.h
src/CGAL/Cartesian/Data_accessor_2.h
src/CGAL/Cartesian/Translation_rep_2.h
src/CGAL/Cartesian/predicates_on_points_3.h
src/CGAL/Cartesian/MatrixC33.h
src/CGAL/Cartesian/Ray_2.h
src/CGAL/Cartesian/plane_constructions_3.h
src/CGAL/Cartesian/Line_3.h
src/CGAL/Cartesian/predicates_on_points_2.h
src/CGAL/Cartesian/Iso_cuboid_3.h
src/CGAL/Cartesian/Point_3.h
src/CGAL/Cartesian/Aff_transformation_rep_2.h
src/CGAL/Cartesian/Tetrahedron_3.h
src/CGAL/Cartesian/Line_2.h
src/CGAL/Cartesian/point_constructions_2.h
src/CGAL/Cartesian/basic_constructions_3.h
src/CGAL/Cartesian/Translation_rep_3.h
src/CGAL/Cartesian/line_constructions_2.h
src/CGAL/Cartesian/Triangle_3.h
src/CGAL/Cartesian/predicates_on_planes_3.h
src/CGAL/Cartesian/predicates_on_directions_2.h
src/CGAL/Cartesian/Plane_3.h
src/CGAL/Cartesian/Ray_3.h
src/CGAL/Cartesian/Point_2.h
src/CGAL/Cartesian/Segment_3.h
src/CGAL/Cartesian/Rotation_rep_2.h
src/CGAL/Cartesian/ft_constructions_3.h
src/CGAL/Cartesian/Aff_transformation_3.h
src/CGAL/Cartesian/point_constructions_3.h
src/CGAL/Cartesian/Vector_3.h
src/CGAL/Cartesian/ft_constructions_2.h
src/CGAL/Cartesian/Cartesian_base.h
src/CGAL/Cartesian/Direction_3.h
src/CGAL/Intersections_2
src/CGAL/Intersections_2/Triangle_2_Triangle_2_intersection_impl.h
src/CGAL/Hilbert_sort_middle_3.h
src/CGAL/min_max_n.h
src/CGAL/Cache.h
src/CGAL/version.h
src/CGAL/Direction_2.h
src/CGAL/Fraction_traits.h
src/CGAL/intersection_3_1.h
src/CGAL/constant.h
src/CGAL/Delaunay_triangulation_cell_base_3.h
src/CGAL/Homogeneous
src/CGAL/Homogeneous/PointH3.h
src/CGAL/Homogeneous/basic_constructionsH3.h
src/CGAL/Homogeneous/function_objects.h
src/CGAL/Homogeneous/VectorH3.h
src/CGAL/Homogeneous/Iso_rectangleH2.h
src/CGAL/Homogeneous/Homogeneous_base.h
src/CGAL/Homogeneous/DirectionH2.h
src/CGAL/Homogeneous/predicates_on_pointsH3.h
src/CGAL/Homogeneous/distance_predicatesH3.h
src/CGAL/Homogeneous/Iso_cuboidH3.h
src/CGAL/Homogeneous/Aff_transformationH3.h
src/CGAL/Homogeneous/PlaneH3.h
src/CGAL/Homogeneous/RayH3.h
src/CGAL/Homogeneous/distance_predicatesH2.h
src/CGAL/Homogeneous/predicates_on_pointsH2.h
src/CGAL/Homogeneous/PointH2.h
src/CGAL/Homogeneous/Data_accessorH2.h
src/CGAL/Homogeneous/predicates_on_directionsH2.h
src/CGAL/Homogeneous/Aff_transformationH2.h
src/CGAL/Homogeneous/DirectionH3.h
src/CGAL/Homogeneous/SphereH3.h
src/CGAL/Homogeneous/VectorH2.h
src/CGAL/Homogeneous/LineH2.h
src/CGAL/Homogeneous/basic_constructionsH2.h
src/CGAL/intersection_2_3.h
src/CGAL/gmpxx_coercion_traits.h
src/CGAL/transforming_iterator.h
src/CGAL/Aff_transformation_2.h
src/CGAL/function_objects.h
src/CGAL/tags.h
src/CGAL/Exact_predicates_exact_constructions_kernel.h
src/CGAL/constructions
src/CGAL/constructions/kernel_ftC3.h
src/CGAL/constructions/constructions_on_weighted_points_cartesian_3.h
src/CGAL/constructions/kernel_ftC2.h
src/CGAL/Vector_2.h
src/CGAL/Line_2_Iso_rectangle_2_intersection.h
src/CGAL/array.h
src/CGAL/predicates
src/CGAL/predicates/sign_of_determinant.h
src/CGAL/predicates/kernel_ftC3.h
src/CGAL/predicates/predicates_on_weighted_points_cartesian_3.h
src/CGAL/predicates/Regular_triangulation_rtH3.h
src/CGAL/predicates/kernel_ftC2.h
src/CGAL/predicates/Regular_triangulation_ftC3.h
src/CGAL/Sqrt_extension_fwd.h
src/CGAL/Triangulation_cell_base_3.h
src/CGAL/GMP_arithmetic_kernel.h
src/CGAL/Circle_2_Line_2_intersection.h
src/CGAL/representation_tags.h
src/CGAL/Residue.h
src/CGAL/Segment_2.h
src/CGAL/N_step_adaptor.h
src/CGAL/is_streamable.h
src/CGAL/compiler_config.h
src/CGAL/internal
src/CGAL/internal/Regular_triangulation_filtered_traits_3.h
src/CGAL/internal/Intersections_3
src/CGAL/internal/Intersections_3/Triangle_3_Ray_3_intersection.h
src/CGAL/internal/Intersections_3/Bbox_3_Triangle_3_do_intersect.h
src/CGAL/internal/Intersections_3/Bbox_3_Sphere_3_do_intersect.h
src/CGAL/internal/Intersections_3/Triangle_3_Line_3_intersection.h
src/CGAL/internal/Intersections_3/Bbox_3_Segment_3_do_intersect.h
src/CGAL/internal/Intersections_3/Bbox_3_Bbox_3_do_intersect.h
src/CGAL/internal/Intersections_3/Bbox_3_Plane_3_do_intersect.h
src/CGAL/internal/Intersections_3/Bbox_3_Line_3_do_intersect.h
src/CGAL/internal/Intersections_3/Triangle_3_Segment_3_intersection.h
src/CGAL/internal/Intersections_3/Bbox_3_Ray_3_do_intersect.h
src/CGAL/internal/info_check.h
src/CGAL/internal/Combination_enumerator.h
src/CGAL/internal/Triangulation
src/CGAL/internal/Triangulation/utilities.h
src/CGAL/internal/Triangulation/Dummy_TDS.h
src/CGAL/internal/Triangulation/Triangulation_ds_iterators.h
src/CGAL/internal/Exact_type_selector.h
src/CGAL/internal/Lazy_alpha_nt_3.h
src/CGAL/internal/Dummy_tds_3.h
src/CGAL/internal/Triangulation_ds_iterators_3.h
src/CGAL/internal/Delaunay_triangulation_hierarchy_3.h
src/CGAL/internal/Projection_traits_3.h
src/CGAL/internal/Static_or_dynamic_array.h
src/CGAL/internal/Triangulation_ds_circulators_3.h
src/CGAL/internal/Static_filters
src/CGAL/internal/Static_filters/Static_filters.h
src/CGAL/internal/Static_filters/Side_of_oriented_circle_2.h
src/CGAL/internal/Static_filters/Do_intersect_3.h
src/CGAL/internal/Static_filters/Orientation_2.h
src/CGAL/internal/Static_filters/Power_test_3.h
src/CGAL/internal/Static_filters/tools.h
src/CGAL/internal/Static_filters/Equal_3.h
src/CGAL/internal/Static_filters/Is_degenerate_3.h
src/CGAL/internal/Static_filters/Angle_3.h
src/CGAL/internal/Static_filters/Compare_y_at_x_2.h
src/CGAL/internal/Static_filters/Compare_weighted_squared_radius_3.h
src/CGAL/internal/Static_filters/Compare_squared_radius_3.h
src/CGAL/internal/Static_filters/Orientation_3.h
src/CGAL/internal/Static_filters/Side_of_oriented_sphere_3.h
src/CGAL/internal/Static_filters/Static_filter_error.h
src/CGAL/internal/Static_filters/Regular_triangulation_static_filters_traits_3.h
src/CGAL/Triangulation_data_structure_3.h
src/CGAL/result_of.h
src/CGAL/ipower.h
src/CGAL/Alpha_shape_cell_base_3.h
src/CGAL/memory.h
src/CGAL/Homogeneous_d.h
src/CGAL/Concurrent_compact_container.h
src/CGAL/N_step_adaptor_derived.h
src/CGAL/Counting_iterator.h
src/CGAL/Segment_2_Segment_2_intersection.h
src/CGAL/squared_distance_3_0.h
src/CGAL/tss.h
src/CGAL/argument_swaps.h
src/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h
src/CGAL/Projection_traits_yz_3.h
src/CGAL/Circulator_project.h
src/CGAL/Ray_2_Line_2_intersection.h
src/CGAL/Hilbert_sort_middle_base.h
src/CGAL/Origin.h
src/CGAL/number_type_config.h
src/CGAL/kernel_basic.h
src/CGAL/Is_a_predicate.h
src/CGAL/Unique_hash_map.h
src/CGAL/Simple_cartesian.h
src/CGAL/predicates_on_points_3.h
src/CGAL/Interval_nt.h
src/CGAL/squared_distance_3_1.h
src/CGAL/Linear_algebraHd.h
src/CGAL/predicates_d.h
src/CGAL/config.h
src/CGAL/TDS_full_cell_default_storage_policy.h
src/CGAL/assertions_behaviour.h
src/CGAL/determinant.h
src/CGAL/MP_Float_impl.h
src/CGAL/vector.h
src/CGAL/Triangulation_vertex.h
src/CGAL/Hilbert_sort_2.h
src/CGAL/number_utils.h
src/CGAL/basic_classes.h
src/CGAL/Get_arithmetic_kernel.h
src/CGAL/Sqrt_extension
src/CGAL/Sqrt_extension/convert_to_bfi.h
src/CGAL/Sqrt_extension/Scalar_factor_traits.h
src/CGAL/Sqrt_extension/Wang_traits.h
src/CGAL/Sqrt_extension/Fraction_traits.h
src/CGAL/Sqrt_extension/Get_arithmetic_kernel.h
src/CGAL/Sqrt_extension/Sqrt_extension_type.h
src/CGAL/Sqrt_extension/Real_embeddable_traits.h
src/CGAL/Sqrt_extension/Chinese_remainder_traits.h
src/CGAL/Sqrt_extension/Algebraic_structure_traits.h
src/CGAL/Sqrt_extension/Eigen_NumTraits.h
src/CGAL/Sqrt_extension/io.h
src/CGAL/Sqrt_extension/Coercion_traits.h
src/CGAL/Sqrt_extension/Algebraic_extension_traits.h
src/CGAL/Sqrt_extension/Modular_traits.h
src/CGAL/Triangulation_ds_vertex.h
src/CGAL/Ray_2.h
src/CGAL/determinant_of_vectors.h
src/CGAL/test_FPU_rounding_mode_impl.h
src/CGAL/assertions.h
src/CGAL/Line_2_Line_2_intersection.h
src/CGAL/squared_distance_3_2.h
src/CGAL/Intersection_traits_3.h
src/CGAL/Circulator_identity.h
src/CGAL/Regular_triangulation_cell_base_3.h
src/CGAL/Needs_parens_as_product.h
src/CGAL/typeset.h
src/CGAL/Hilbert_sort_median_3.h
src/CGAL/Line_3.h
src/CGAL/utility.h
src/CGAL/predicates_on_points_2.h
src/CGAL/Has_timestamp.h
src/CGAL/Triangulation_ds_full_cell.h
src/CGAL/Weighted_alpha_shape_euclidean_traits_3.h
src/CGAL/Triangulation_ds_cell_base_3.h
src/CGAL/Conic_misc.h
src/CGAL/Tools
src/CGAL/Tools/chained_map.h
src/CGAL/Point_2_Point_2_intersection.h
src/CGAL/distance_predicates_2.h
src/CGAL/Multiset.h
src/CGAL/Iso_cuboid_3.h
src/CGAL/Triangle_2_Triangle_2_intersection.h
src/CGAL/Hilbert_sort_median_d.h
src/CGAL/Point_3.h
src/CGAL/iterator_from_indices.h
src/CGAL/Triangulation_ds_vertex_base_3.h
src/CGAL/algorithm.h
src/CGAL/predicates_on_lines_2.h
src/CGAL/Triangulation_geom_traits_3.h
src/CGAL/Triangulation_vertex_base_3.h
src/CGAL/Default.h
src/CGAL/Point_2_Iso_rectangle_2_intersection.h
src/CGAL/Complexity_tags.h
src/CGAL/Handle_for.h
src/CGAL/In_place_list.h
src/CGAL/Lazy_exact_nt.h
src/CGAL/Ray_2_Iso_rectangle_2_intersection.h
src/CGAL/Fourtuple.h
src/CGAL/copy_n.h
src/CGAL/Dimension.h
src/CGAL/NewKernel_d
src/CGAL/NewKernel_d/Kernel_3_interface.h
src/CGAL/NewKernel_d/Define_kernel_types.h
src/CGAL/NewKernel_d/functor_tags.h
src/CGAL/NewKernel_d/Dimension_base.h
src/CGAL/NewKernel_d/functor_properties.h
src/CGAL/NewKernel_d/Kernel_d_interface.h
src/CGAL/NewKernel_d/Vector
src/CGAL/NewKernel_d/Vector/mix.h
src/CGAL/NewKernel_d/Vector/determinant_of_points_from_vectors.h
src/CGAL/NewKernel_d/Vector/avx4.h
src/CGAL/NewKernel_d/Vector/array.h
src/CGAL/NewKernel_d/Vector/vector.h
src/CGAL/NewKernel_d/Vector/v2int.h
src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim_internal.h
src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_points.h
src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_points_from_iterator_to_vectors.h
src/CGAL/NewKernel_d/Vector/determinant_of_vectors_small_dim.h
src/CGAL/NewKernel_d/Vector/determinant_of_iterator_to_vectors_from_vectors.h
src/CGAL/NewKernel_d/Vector/sse2.h
src/CGAL/NewKernel_d/Wrapper
src/CGAL/NewKernel_d/Wrapper/Hyperplane_d.h
src/CGAL/NewKernel_d/Wrapper/Point_d.h
src/CGAL/NewKernel_d/Wrapper/Vector_d.h
src/CGAL/NewKernel_d/Wrapper/Sphere_d.h
src/CGAL/NewKernel_d/Wrapper/Ref_count_obj.h
src/CGAL/NewKernel_d/Wrapper/Cartesian_wrap.h
src/CGAL/NewKernel_d/Wrapper/Segment_d.h
src/CGAL/NewKernel_d/Cartesian_LA_base.h
src/CGAL/NewKernel_d/Cartesian_complete.h
src/CGAL/NewKernel_d/Cartesian_LA_functors.h
src/CGAL/NewKernel_d/Cartesian_static_filters.h
src/CGAL/NewKernel_d/utils.h
src/CGAL/NewKernel_d/Types
src/CGAL/NewKernel_d/Types/Hyperplane.h
src/CGAL/NewKernel_d/Types/Line.h
src/CGAL/NewKernel_d/Types/Aff_transformation.h
src/CGAL/NewKernel_d/Types/Ray.h
src/CGAL/NewKernel_d/Types/Segment.h
src/CGAL/NewKernel_d/Types/Sphere.h
src/CGAL/NewKernel_d/Types/Iso_box.h
src/CGAL/NewKernel_d/Kernel_object_converter.h
src/CGAL/NewKernel_d/Cartesian_per_dimension.h
src/CGAL/NewKernel_d/Cartesian_filter_NT.h
src/CGAL/NewKernel_d/KernelD_converter.h
src/CGAL/NewKernel_d/Filtered_predicate2.h
src/CGAL/NewKernel_d/Cartesian_filter_K.h
src/CGAL/NewKernel_d/Kernel_2_interface.h
src/CGAL/NewKernel_d/Lazy_cartesian.h
src/CGAL/NewKernel_d/static_int.h
src/CGAL/NewKernel_d/LA_eigen
src/CGAL/NewKernel_d/LA_eigen/LA.h
src/CGAL/NewKernel_d/LA_eigen/constructors.h
src/CGAL/NewKernel_d/store_kernel.h
src/CGAL/NewKernel_d/Cartesian_change_FT.h
src/CGAL/NewKernel_d/function_objects_cartesian.h
src/CGAL/NewKernel_d/Cartesian_base.h
src/CGAL/NewKernel_d/Coaffine.h
src/CGAL/utils.h
src/CGAL/Hilbert_sort_middle_d.h
src/CGAL/auto_link
src/CGAL/auto_link/TAUCS.h
src/CGAL/auto_link/CORE.h
src/CGAL/auto_link/CGAL.h
src/CGAL/auto_link/ImageIO.h
src/CGAL/auto_link/auto_link.h
src/CGAL/auto_link/LAPACK.h
src/CGAL/Ray_2_Triangle_2_intersection.h
src/CGAL/number_utils_classes.h
src/CGAL/Triangle_3_Point_3_do_intersect.h
src/CGAL/squared_distance_3.h
src/CGAL/Tetrahedron_3.h
src/CGAL/Kernel
src/CGAL/Kernel/interface_macros.h
src/CGAL/Kernel/global_functions_2.h
src/CGAL/Kernel/Type_equality_wrapper.h
src/CGAL/Kernel/Return_base_tag.h
src/CGAL/Kernel/function_objects.h
src/CGAL/Kernel/mpl.h
src/CGAL/Kernel/global_functions_3.h
src/CGAL/Kernel/Same_uncertainty.h
src/CGAL/Kernel/solve.h
src/CGAL/Kernel/Wutils.h
src/CGAL/Kernel/global_functions_internal_2.h
src/CGAL/Kernel/Type_mapper.h
src/CGAL/Kernel/global_functions.h
src/CGAL/Kernel/Dimension_utils.h
src/CGAL/Kernel/global_functions_internal_3.h
src/CGAL/Triangulation_face.h
src/CGAL/NT_converter.h
src/CGAL/basic.h
src/CGAL/Triangle_2_Ray_2_intersection.h
src/CGAL/Gmpzf.h
src/CGAL/Regular_triangulation_3.h
src/CGAL/Kernel_traits.h
src/CGAL/Hilbert_sort_middle_2.h
src/CGAL/squared_distance_2_1.h
src/CGAL/Real_embeddable_traits.h
src/CGAL/Line_2.h
src/CGAL/export
src/CGAL/export/CORE.h
src/CGAL/export/CGAL.h
src/CGAL/export/ImageIO.h
src/CGAL/export/helpers.h
src/CGAL/Chinese_remainder_traits.h
src/CGAL/Handle_hash_function.h
src/CGAL/Ray_2_Ray_2_intersection.h
src/CGAL/Cartesian_converter.h
src/CGAL/Alpha_shape_3.h
src/CGAL/IO
src/CGAL/IO/File_writer_VRML_2.h
src/CGAL/IO/Dxf_stream.h
src/CGAL/IO/File_writer_inventor.h
src/CGAL/IO/Arr_text_formatter.h
src/CGAL/IO/read_xyz_points.h
src/CGAL/IO/Complex_2_in_triangulation_3_file_writer.h
src/CGAL/IO/generic_print_polyhedron.h
src/CGAL/IO/Complex_3_in_triangulation_3_to_vtk.h
src/CGAL/IO/Geomview_stream.h
src/CGAL/IO/Arrangement_2_reader.h
src/CGAL/IO/Dxf_reader_doubles.h
src/CGAL/IO/output_surface_facets_to_triangle_soup.h
src/CGAL/IO/alpha_shape_geomview_ostream_3.h
src/CGAL/IO/Arr_with_history_text_formatter.h
src/CGAL/IO/Complex_2_in_triangulation_3_to_vtk.h
src/CGAL/IO/Writer_OFF.h
src/CGAL/IO/Nef_polyhedron_S2_OGLUT_stream.h
src/CGAL/IO/VRML_2_ostream.h
src/CGAL/IO/io_tags.h
src/CGAL/IO/binary_file_io.h
src/CGAL/IO/Nef_polyhedron_iostream_S2.h
src/CGAL/IO/Triangulation_geomview_ostream_2.h
src/CGAL/IO/Complex_2_in_triangulation_3_polyhedron_builder.h
src/CGAL/IO/File_tetgen.h
src/CGAL/IO/Polyhedron_scan_OFF.h
src/CGAL/IO/Nef_polyhedron_iostream_3.h
src/CGAL/IO/File_scanner_OFF.h
src/CGAL/IO/Color_impl.h
src/CGAL/IO/read_off_points.h
src/CGAL/IO/Istream_iterator.h
src/CGAL/IO/Alpha_shape_3_VRML_2_ostream.h
src/CGAL/IO/Verbose_ostream.h
src/CGAL/IO/Dxf_reader.h
src/CGAL/IO/print_wavefront.h
src/CGAL/IO/Polyhedron_VRML_2_ostream.h
src/CGAL/IO/Dxf_bsop_reader.h
src/CGAL/IO/Triangulation_geomview_ostream_3.h
src/CGAL/IO/VRML_1_ostream.h
src/CGAL/IO/Geomview_stream_impl.h
src/CGAL/IO/Arr_with_history_iostream.h
src/CGAL/IO/Arrangement_2_writer.h
src/CGAL/IO/generic_copy_OFF.h
src/CGAL/IO/Polyhedron_iostream.h
src/CGAL/IO/Generic_writer.h
src/CGAL/IO/Arr_with_history_2_writer.h
src/CGAL/IO/Fig_stream_Conic_arc_2.h
src/CGAL/IO/Arr_with_history_2_reader.h
src/CGAL/IO/Polyhedron_inventor_ostream.h
src/CGAL/IO/Polyhedron_geomview_ostream.h
src/CGAL/IO/write_xyz_points.h
src/CGAL/IO/print_VRML_1.h
src/CGAL/IO/Fig_stream.h
src/CGAL/IO/Inventor_ostream.h
src/CGAL/IO/Dxf_variant_reader.h
src/CGAL/IO/Color.h
src/CGAL/IO/Gps_iostream.h
src/CGAL/IO/print_OFF.h
src/CGAL/IO/io.h
src/CGAL/IO/File_writer_wavefront.h
src/CGAL/IO/print_inventor.h
src/CGAL/IO/Triangulation_ps_stream.h
src/CGAL/IO/File_header_extended_OFF.h
src/CGAL/IO/Polyhedron_VRML_1_ostream.h
src/CGAL/IO/File_poly.h
src/CGAL/IO/File_writer_OFF.h
src/CGAL/IO/print_VRML_2.h
src/CGAL/IO/File_header_OFF.h
src/CGAL/IO/write_off_points.h
src/CGAL/IO/Nef_polyhedron_2_PS_stream.h
src/CGAL/IO/io_impl.h
src/CGAL/IO/Tee_for_output_iterator.h
src/CGAL/IO/Scanner_OFF.h
src/CGAL/IO/File_maya.h
src/CGAL/IO/Arr_iostream.h
src/CGAL/IO/output_surface_facets_to_polyhedron.h
src/CGAL/IO/scan_OFF.h
src/CGAL/IO/Ostream_iterator.h
src/CGAL/IO/File_binary_mesh_3.h
src/CGAL/IO/Dxf_writer.h
src/CGAL/IO/File_medit.h
src/CGAL/Simple_homogeneous.h
src/CGAL/type_traits.h
src/CGAL/Point_2_Triangle_2_intersection.h
src/CGAL/Handle_with_policy.h
src/CGAL/intersection_3.h
src/CGAL/Triangulation_full_cell.h
src/CGAL/circulator_bases.h
src/CGAL/Object.h
src/CGAL/GMP
src/CGAL/GMP/Gmpzf_type.h
src/CGAL/GMP/Gmpq_type.h
src/CGAL/GMP/Gmpz_type.h
src/CGAL/GMP/Gmpfr_type_static.h
src/CGAL/GMP/Gmpfr_type.h
src/CGAL/circulator.h
src/CGAL/Exact_predicates_inexact_constructions_kernel.h
src/CGAL/Hilbert_sort_3.h
src/CGAL/aff_transformation_tags_impl.h
src/CGAL/Algebraic_structure_traits.h
src/CGAL/distance_predicates_3.h
src/CGAL/intersections.h
src/CGAL/FPU.h
src/CGAL/Filtered_predicate.h
src/CGAL/Spatial_sort_traits_adapter_3.h
src/CGAL/Fixed_alpha_shape_vertex_base_3.h
src/CGAL/Uncertain.h
src/CGAL/basic_constructions_3.h
src/CGAL/functions_on_enums.h
src/CGAL/Linear_algebraCd.h
src/CGAL/Alpha_shape_euclidean_traits_3.h
src/CGAL/constructions_d.h
src/CGAL/Bbox_2.h
src/CGAL/TDS_full_cell_mirror_storage_policy.h
src/CGAL/Delaunay_triangulation.h
src/CGAL/Alpha_shape_vertex_base_3.h
src/CGAL/wmult.h
src/CGAL/Delaunay_triangulation_3.h
src/CGAL/Filtered_kernel.h
src/CGAL/Interval_traits.h
src/CGAL/Triangle_3.h
src/CGAL/Handle_for_virtual.h
src/CGAL/Segment_2_Line_2_intersection.h
src/CGAL/Interval_arithmetic.h
src/CGAL/Polygon_2
src/CGAL/Polygon_2/polygon_assertions.h
src/CGAL/Polygon_2/Polygon_2_simplicity.h
src/CGAL/Polygon_2/Polygon_2_algorithms_impl.h
src/CGAL/squared_distance_utils.h
src/CGAL/Fixed_alpha_shape_3.h
src/CGAL/Triangulation_hierarchy_vertex_base_3.h
src/CGAL/Circulator_on_node.h
src/CGAL/Profile_counter.h
src/CGAL/boost
src/CGAL/boost/iterator
src/CGAL/boost/iterator/transform_iterator.hpp
src/CGAL/boost/iterator/counting_iterator.hpp
src/CGAL/Random.h
src/CGAL/Plane_3.h
src/CGAL/Ray_3.h
src/CGAL/float.h
src/CGAL/Point_2_Ray_2_intersection.h
src/CGAL/Point_2.h
src/CGAL/MP_Float_arithmetic_kernel.h
src/CGAL/Quotient.h
src/CGAL/intersection_2_1.h
src/CGAL/simple_transformations_d.h
src/CGAL/assertions.cpp
src/CGAL/Hilbert_sort_base.h
src/CGAL/Triangulation_data_structure.h
src/CGAL/Triangulation_utils_3.h
src/CGAL/Triangle_2_Segment_2_intersection.h
src/CGAL/Coercion_traits.h
src/CGAL/Sqrt_extension.h
src/CGAL/MP_Float.h
src/CGAL/Triangulation_3.h
src/CGAL/Triangulation_simplex_3.h
src/CGAL/Segment_3.h
src/CGAL/ConicCPA2.h
src/CGAL/Compact_container.h
src/CGAL/Projection_traits_xz_3.h
src/CGAL/ConicHPA2.h
src/CGAL/Iterator_transform.h
src/CGAL/exceptions.h
src/CGAL/Gmp_coercion_traits.h
src/CGAL/mpz_class.h
src/CGAL/Iso_rectangle_2_Iso_rectangle_2_intersection.h
src/CGAL/double.h
src/CGAL/Triangle_3_Line_3_do_intersect.h
src/CGAL/long_long.h
src/CGAL/long_double.h
src/CGAL/Triangulation_vertex_base_with_info_3.h
src/CGAL/Random_access_adaptor.h
src/CGAL/Threetuple.h
src/CGAL/Aff_transformation_3.h
src/CGAL/Ray_2_Segment_2_intersection.h
src/CGAL/multiset_assertions.h
src/CGAL/Triangulation_cell_base_with_info_3.h
src/CGAL/Join_input_iterator.h
src/CGAL/rational_rotation.h
src/CGAL/Spatial_sort_traits_adapter_d.h
src/CGAL/sse2.h
src/CGAL/Hilbert_policy_tags.h
src/CGAL/Triangle_3_Plane_3_do_intersect.h
src/CGAL/Straight_2.h
src/CGAL/tuple.h
src/CGAL/Modular_arithmetic
src/CGAL/Modular_arithmetic/Residue_type.h
src/CGAL/number_type_basic.h
src/CGAL/Intersection_traits_2.h
src/CGAL/aff_transformation_tags.h
src/CGAL/Twotuple.h
src/CGAL/squared_distance_2.h
src/CGAL/Epick_d.h
src/CGAL/kernel_config.h
src/CGAL/Regular_triangulation_euclidean_traits_3.h
src/CGAL/transforming_pair_iterator.h
src/CGAL/Triangle_3_Triangle_3_do_intersect.h
src/CGAL/Flattening_iterator.h
src/CGAL/iterator.h
src/CGAL/Concatenate_iterator.h
src/CGAL/Handle.h
src/CGAL/Iterator_project.h
src/CGAL/Vector_3.h
src/CGAL/gmpxx.h
src/CGAL/Triangle_3_Segment_3_do_intersect.h
src/CGAL/Weighted_point.h
src/CGAL/Projection_traits_xy_3.h
src/CGAL/hilbert_sort.h
src/CGAL/Modifiable_priority_queue.h
src/CGAL/Intersection_traits.h
src/CGAL/Inverse_index.h
src/CGAL/Triangulation.h
src/CGAL/Circle_2_Circle_2_intersection.h
src/CGAL/Direction_3.h
src/CGAL/Cartesian_d.h
src/CGAL/Algebraic_extension_traits.h
src/CGAL/assertions_impl.h
src/CGAL/Modular_traits.h
src/CGAL/user_classes.h
src/CGAL/intersections_d.h
src/CGAL/Fixed_alpha_shape_cell_base_3.h
src/CGAL/Segment_2_Triangle_2_intersection.h
src/CGAL/Triangle_2_Line_2_intersection.h
src/CGAL/Spatial_lock_grid_3.h
src/CGAL/Enum_converter.h
src/geometry
src/geometry/distances.h
src/geometry/weighted-cechdistance.h
src/geometry/simulator.h
src/geometry/linear-kernel.h
src/geometry/rational-function.h
src/geometry/l2distance.h
src/geometry/NOTES
src/geometry/linalg.hpp
src/geometry/kinetic-sort.h
src/geometry/simulator.hpp
src/geometry/polynomial.hpp
src/geometry/distances.hpp
src/geometry/euclidean.h
src/geometry/linalg.h
src/geometry/weighted-l2distance.h
src/geometry/number-traits.h
src/geometry/polynomial.h
src/geometry/euclidean.hpp
src/geometry/Arbitdistance.h
src/boost
src/boost/serialization
src/boost/serialization/binary_object.hpp
src/gudhi
src/gudhi/Points_off_io.h
src/gudhi/Persistent_cohomology
src/gudhi/Persistent_cohomology/Persistent_cohomology_column.h
src/gudhi/Persistent_cohomology/Field_Zp.h
src/gudhi/Persistent_cohomology/Multi_field.h
src/gudhi/Debug_utils.h
src/gudhi/distance_functions.h
src/gudhi/reader_utils.h
src/gudhi/Off_reader.h
src/gudhi/Alpha_complex.h
src/gudhi/Simplex_tree.h
src/gudhi/graph_simplicial_complex.h
src/gudhi/Simple_object_pool.h
src/gudhi/Simplex_tree
src/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h
src/gudhi/Simplex_tree/Simplex_tree_iterators.h
src/gudhi/Simplex_tree/Simplex_tree_siblings.h
src/gudhi/Simplex_tree/indexing_tag.h
src/gudhi/Persistent_cohomology.h
src/diag.cpp
src/phat
src/phat/boundary_matrix.h
src/phat/helpers
src/phat/helpers/dualize.h
src/phat/helpers/misc.h
src/phat/helpers/thread_local_storage.h
src/phat/algorithms
src/phat/algorithms/row_reduction.h
src/phat/algorithms/chunk_reduction.h
src/phat/algorithms/spectral_sequence_reduction.h
src/phat/algorithms/twist_reduction.h
src/phat/algorithms/standard_reduction.h
src/phat/representations
src/phat/representations/vector_heap.h
src/phat/representations/bit_tree_pivot_column.h
src/phat/representations/vector_set.h
src/phat/representations/abstract_pivot_column.h
src/phat/representations/vector_list.h
src/phat/representations/vector_vector.h
src/phat/representations/heap_pivot_column.h
src/phat/representations/full_pivot_column.h
src/phat/representations/sparse_pivot_column.h
src/phat/compute_persistence_pairs.h
src/phat/persistence_pairs.h
src/init.c
src/RcppExports.cpp
src/topology
src/topology/lsvineyard.h
src/topology/lsvineyard.hpp
src/topology/conesimplex.h
src/topology/complex-traits.h
src/topology/dynamic-persistence.hpp
src/topology/weighted-rips.h
src/topology/rips.hpp
src/topology/cycles.h
src/topology/persistence-diagram.h
src/topology/filtration.h
src/topology/chain.hpp
src/topology/static-persistence.hpp
src/topology/image-zigzag-persistence.h
src/topology/order.h
src/topology/conesimplex.hpp
src/topology/static-persistence.h
src/topology/filtration.hpp
src/topology/cohomology-persistence.h
src/topology/simplex.h
src/topology/chain.h
src/topology/field-arithmetic.h
src/topology/simplex.hpp
src/topology/lowerstarfiltration.h
src/topology/image-zigzag-persistence.hpp
src/topology/rips.h
src/topology/persistence-diagram.hpp
src/topology/dynamic-persistence.h
src/topology/zigzag-persistence.h
src/topology/vineyard.h
src/gmpxx.h
src/utilities
src/utilities/counter.h
src/utilities/circular_list.h
src/utilities/orderlist.h
src/utilities/log.h
src/utilities/binaryheap.h
src/utilities/memory.h
src/utilities/timer.h
src/utilities/indirect.h
src/utilities/eventqueue.h
src/utilities/containers.h
src/utilities/consistencylist.hpp
src/utilities/types.h
src/utilities/consistencylist.h
src/utilities/munkres
src/utilities/munkres/munkres.h
src/utilities/munkres/matrix.hpp
src/utilities/munkres/munkres.cpp
src/utilities/munkres/matrix.h
src/utilities/property-maps.h
NAMESPACE
NEWS
R
R/alphaComplexDiag.R
R/findKtree.R
R/maxPersistence.R
R/plot.maxPersistence.R
R/gridDiag.R
R/plotRule.R
R/hausdInterval.R
R/summary.diagram.R
R/ripsDiag.R
R/kernelDist.R
R/print.clusterTree.R
R/rMultinom.R
R/bootstrapBand.R
R/sphereUnif.R
R/landscape.R
R/distFct.R
R/print.summary.maxPersistence.R
R/summary.maxPersistence.R
R/circleUnif.R
R/bootstrapDiagram.R
R/wasserstein.R
R/clusterTree.R
R/multipBootstrap.R
R/print.summary.diagram.R
R/kde.R
R/gridBy.R
R/RcppExports.R
R/knnDE.R
R/torusUnif.R
R/siloF.R
R/print.maxPersistence.R
R/plot.clusterTree.R
R/dtm.R
R/silhouette.R
R/bottleneck.R
R/plot.diagram.R
R/print.diagram.R
R/alphaShapeDiag.R
vignettes
vignettes/article.Rnw
vignettes/biblio.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/TDA-internal.Rd
man/gridDiag.Rd
man/wasserstein.Rd
man/TDA-package.Rd
man/bootstrapBand.Rd
man/torusUnif.Rd
man/silhouette.Rd
man/plot.maxPersistence.Rd
man/dtm.Rd
man/sphereUnif.Rd
man/summary.diagram.Rd
man/plot.clusterTree.Rd
man/distFct.Rd
man/ripsDiag.Rd
man/alphaComplexDiag.Rd
man/kernelDist.Rd
man/plot.diagram.Rd
man/multipBootstrap.Rd
man/circleUnif.Rd
man/clusterTree.Rd
man/kde.Rd
man/maxPersistence.Rd
man/hausdInterval.Rd
man/landscape.Rd
man/bootstrapDiagram.Rd
man/knnDE.Rd
man/alphaShapeDiag.Rd
man/bottleneck.Rd
TDA documentation built on May 19, 2017, 7:52 a.m.