TDCor: Gene Network Inference from Time-Series Transcriptomic Data
Version 0.1-2

The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Package details

AuthorJulien Lavenus
Date of publication2015-10-26 15:58:36
MaintainerMikael Lucas <[email protected]>
LicenseGPL (>= 2)
Version0.1-2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TDCor")

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TDCor documentation built on May 30, 2017, 7:27 a.m.