TF: Table of 1834 Arabidopsis Transcription factors

Description Usage Source References Examples

Description

TF is a dataframe with two columns. The first column contains the AGI gene code of 1834 genes encoding Arabidopsis transcription factors. The second column contains the associated gene names.

Usage

1
data("TF")

Source

Data published on the Agris database website (http://arabidopsis.med.ohio-state.edu/AtTFDB/).

References

Davuluri et al. (2003), AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors, BMC Bioinformatics, 4:25

Examples

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# Load the database
data(TF)

# Obtain the transcription factors for which data is available in the LR dataset
# i.e. present on ATH1 chip and differentially expressed.
data(LR_dataset)
clean.at(LR_dataset,TF[,1])

Example output

Loading required package: deSolve
   [1] "AT1G01010" "AT1G01060" "AT1G01250" "AT1G01380" "AT1G01720" "AT1G02220"
   [7] "AT1G02340" "AT1G03040" "AT1G03840" "AT1G03970" "AT1G04360" "AT1G04790"
  [13] "AT1G04850" "AT1G04880" "AT1G04990" "AT1G05710" "AT1G06040" "AT1G06070"
  [19] "AT1G06160" "AT1G06170" "AT1G06180" "AT1G06850" "AT1G07520" "AT1G07530"
  [25] "AT1G07640" "AT1G07980" "AT1G08320" "AT1G08810" "AT1G08970" "AT1G09250"
  [31] "AT1G09530" "AT1G09540" "AT1G09770" "AT1G10120" "AT1G10480" "AT1G10610"
  [37] "AT1G11020" "AT1G12040" "AT1G12260" "AT1G12860" "AT1G13260" "AT1G13300"
  [43] "AT1G13450" "AT1G13600" "AT1G13960" "AT1G14200" "AT1G14350" "AT1G14410"
  [49] "AT1G14510" "AT1G14580" "AT1G14920" "AT1G15100" "AT1G15720" "AT1G16060"
  [55] "AT1G16070" "AT1G16490" "AT1G17460" "AT1G17520" "AT1G17590" "AT1G17920"
  [61] "AT1G17950" "AT1G18400" "AT1G18470" "AT1G18570" "AT1G18710" "AT1G18860"
  [67] "AT1G19000" "AT1G19220" "AT1G19310" "AT1G19700" "AT1G19850" "AT1G20640"
  [73] "AT1G20700" "AT1G20910" "AT1G20980" "AT1G21450" "AT1G21910" "AT1G22070"
  [79] "AT1G22190" "AT1G22490" "AT1G22510" "AT1G22640" "AT1G22810" "AT1G23380"
  [85] "AT1G23540" "AT1G25280" "AT1G25470" "AT1G25550" "AT1G25560" "AT1G26150"
  [91] "AT1G26260" "AT1G26590" "AT1G26610" "AT1G26680" "AT1G26800" "AT1G26870"
  [97] "AT1G26960" "AT1G27050" "AT1G27370" "AT1G27740" "AT1G28050" "AT1G28160"
 [103] "AT1G28360" "AT1G28460" "AT1G28470" "AT1G28520" "AT1G29160" "AT1G29280"
 [109] "AT1G29860" "AT1G29950" "AT1G30210" "AT1G30330" "AT1G30490" "AT1G30500"
 [115] "AT1G30650" "AT1G30810" "AT1G30970" "AT1G31050" "AT1G32240" "AT1G32640"
 [121] "AT1G33060" "AT1G33070" "AT1G33240" "AT1G33280" "AT1G34180" "AT1G34190"
 [127] "AT1G34370" "AT1G34670" "AT1G35560" "AT1G36060" "AT1G42990" "AT1G43160"
 [133] "AT1G43640" "AT1G43700" "AT1G43860" "AT1G44810" "AT1G44830" "AT1G47270"
 [139] "AT1G47870" "AT1G48000" "AT1G49010" "AT1G49480" "AT1G49490" "AT1G49560"
 [145] "AT1G49720" "AT1G49850" "AT1G49950" "AT1G50420" "AT1G50440" "AT1G50600"
 [151] "AT1G50640" "AT1G50670" "AT1G51070" "AT1G51140" "AT1G51190" "AT1G51600"
 [157] "AT1G52150" "AT1G52880" "AT1G53170" "AT1G53230" "AT1G53320" "AT1G53820"
 [163] "AT1G53910" "AT1G54060" "AT1G54330" "AT1G54830" "AT1G55110" "AT1G55580"
 [169] "AT1G56010" "AT1G56160" "AT1G56170" "AT1G56200" "AT1G58100" "AT1G58220"
 [175] "AT1G59640" "AT1G59750" "AT1G61660" "AT1G61730" "AT1G62300" "AT1G62700"
 [181] "AT1G62990" "AT1G63040" "AT1G63100" "AT1G63650" "AT1G63840" "AT1G63900"
 [187] "AT1G63910" "AT1G64000" "AT1G64380" "AT1G64530" "AT1G64620" "AT1G65040"
 [193] "AT1G65910" "AT1G66140" "AT1G66230" "AT1G66350" "AT1G66470" "AT1G67030"
 [199] "AT1G67710" "AT1G67910" "AT1G67970" "AT1G68070" "AT1G68120" "AT1G68130"
 [205] "AT1G68150" "AT1G68200" "AT1G68360" "AT1G68520" "AT1G68550" "AT1G68640"
 [211] "AT1G68670" "AT1G68690" "AT1G68810" "AT1G68880" "AT1G68920" "AT1G69010"
 [217] "AT1G69170" "AT1G69310" "AT1G69330" "AT1G69490" "AT1G69540" "AT1G69560"
 [223] "AT1G69570" "AT1G69580" "AT1G69600" "AT1G69690" "AT1G69780" "AT1G69810"
 [229] "AT1G70000" "AT1G70460" "AT1G70510" "AT1G70790" "AT1G70920" "AT1G71130"
 [235] "AT1G71260" "AT1G71930" "AT1G72050" "AT1G72220" "AT1G72350" "AT1G72360"
 [241] "AT1G72650" "AT1G72740" "AT1G73410" "AT1G73730" "AT1G73760" "AT1G73830"
 [247] "AT1G73950" "AT1G74080" "AT1G74250" "AT1G74370" "AT1G74410" "AT1G74430"
 [253] "AT1G74500" "AT1G74650" "AT1G74660" "AT1G74840" "AT1G75390" "AT1G75410"
 [259] "AT1G75430" "AT1G75490" "AT1G75520" "AT1G75540" "AT1G75710" "AT1G76350"
 [265] "AT1G76410" "AT1G76420" "AT1G76510" "AT1G76580" "AT1G76880" "AT1G76900"
 [271] "AT1G77200" "AT1G77450" "AT1G77640" "AT1G77830" "AT1G77850" "AT1G77920"
 [277] "AT1G78080" "AT1G78600" "AT1G78700" "AT1G79180" "AT1G79580" "AT1G79700"
 [283] "AT1G79840" "AT1G80400" "AT1G80730" "AT2G01060" "AT2G01430" "AT2G01570"
 [289] "AT2G01650" "AT2G01760" "AT2G01930" "AT2G01940" "AT2G02070" "AT2G02080"
 [295] "AT2G02450" "AT2G02470" "AT2G02540" "AT2G02740" "AT2G03060" "AT2G03340"
 [301] "AT2G03470" "AT2G03500" "AT2G03710" "AT2G04240" "AT2G04880" "AT2G04890"
 [307] "AT2G06020" "AT2G06200" "AT2G15580" "AT2G15880" "AT2G16400" "AT2G16720"
 [313] "AT2G16910" "AT2G17040" "AT2G17150" "AT2G17450" "AT2G17770" "AT2G18060"
 [319] "AT2G18120" "AT2G18160" "AT2G18280" "AT2G18300" "AT2G18350" "AT2G18380"
 [325] "AT2G18490" "AT2G18550" "AT2G18650" "AT2G18670" "AT2G19380" "AT2G20030"
 [331] "AT2G20110" "AT2G20880" "AT2G21240" "AT2G21320" "AT2G21650" "AT2G21900"
 [337] "AT2G22120" "AT2G22200" "AT2G22430" "AT2G22540" "AT2G22750" "AT2G22760"
 [343] "AT2G22770" "AT2G22800" "AT2G22840" "AT2G22850" "AT2G22900" "AT2G23290"
 [349] "AT2G23320" "AT2G23340" "AT2G23740" "AT2G23760" "AT2G23780" "AT2G24260"
 [355] "AT2G24430" "AT2G24500" "AT2G24570" "AT2G24630" "AT2G24790" "AT2G25000"
 [361] "AT2G25180" "AT2G25650" "AT2G25820" "AT2G27050" "AT2G27100" "AT2G27230"
 [367] "AT2G27300" "AT2G27760" "AT2G28160" "AT2G28200" "AT2G28550" "AT2G28610"
 [373] "AT2G28700" "AT2G28710" "AT2G28810" "AT2G29060" "AT2G29660" "AT2G30250"
 [379] "AT2G30410" "AT2G30580" "AT2G30590" "AT2G31070" "AT2G31180" "AT2G31230"
 [385] "AT2G31370" "AT2G31510" "AT2G31730" "AT2G32460" "AT2G32600" "AT2G32930"
 [391] "AT2G33480" "AT2G33500" "AT2G33710" "AT2G34140" "AT2G34710" "AT2G34720"
 [397] "AT2G34830" "AT2G34990" "AT2G35000" "AT2G35530" "AT2G35700" "AT2G35910"
 [403] "AT2G35940" "AT2G36010" "AT2G36080" "AT2G36270" "AT2G36400" "AT2G36720"
 [409] "AT2G36890" "AT2G36930" "AT2G37060" "AT2G37150" "AT2G37260" "AT2G37430"
 [415] "AT2G37580" "AT2G37590" "AT2G37630" "AT2G37950" "AT2G38090" "AT2G38250"
 [421] "AT2G38340" "AT2G38470" "AT2G38880" "AT2G39880" "AT2G40200" "AT2G40260"
 [427] "AT2G40620" "AT2G40750" "AT2G40950" "AT2G40970" "AT2G41070" "AT2G41690"
 [433] "AT2G41710" "AT2G42280" "AT2G42300" "AT2G42350" "AT2G42360" "AT2G42380"
 [439] "AT2G42400" "AT2G42660" "AT2G43000" "AT2G43060" "AT2G43140" "AT2G43500"
 [445] "AT2G44910" "AT2G44940" "AT2G45050" "AT2G45120" "AT2G45160" "AT2G45190"
 [451] "AT2G45680" "AT2G46130" "AT2G46270" "AT2G46310" "AT2G46410" "AT2G46590"
 [457] "AT2G46680" "AT2G46730" "AT2G46830" "AT2G47190" "AT2G47260" "AT2G47270"
 [463] "AT2G47460" "AT2G47520" "AT2G47810" "AT2G47890" "AT2G48100" "AT3G01080"
 [469] "AT3G01140" "AT3G01220" "AT3G01330" "AT3G01470" "AT3G01560" "AT3G01970"
 [475] "AT3G02150" "AT3G02290" "AT3G02340" "AT3G02380" "AT3G02790" "AT3G02830"
 [481] "AT3G02940" "AT3G02990" "AT3G03200" "AT3G03260" "AT3G03450" "AT3G03550"
 [487] "AT3G03660" "AT3G04030" "AT3G04060" "AT3G04070" "AT3G04420" "AT3G04670"
 [493] "AT3G05150" "AT3G05160" "AT3G05760" "AT3G05800" "AT3G06140" "AT3G06380"
 [499] "AT3G06590" "AT3G06740" "AT3G07200" "AT3G07340" "AT3G07650" "AT3G07940"
 [505] "AT3G08500" "AT3G09290" "AT3G09600" "AT3G09770" "AT3G10470" "AT3G10480"
 [511] "AT3G10490" "AT3G10500" "AT3G10760" "AT3G10800" "AT3G10810" "AT3G10910"
 [517] "AT3G11020" "AT3G11200" "AT3G11280" "AT3G11440" "AT3G11580" "AT3G12250"
 [523] "AT3G12270" "AT3G12480" "AT3G12560" "AT3G12720" "AT3G12730" "AT3G12820"
 [529] "AT3G13040" "AT3G13350" "AT3G13810" "AT3G14180" "AT3G14230" "AT3G14740"
 [535] "AT3G14980" "AT3G15210" "AT3G15500" "AT3G15510" "AT3G16090" "AT3G16280"
 [541] "AT3G16350" "AT3G16720" "AT3G16770" "AT3G16870" "AT3G16940" "AT3G17100"
 [547] "AT3G17730" "AT3G18100" "AT3G18290" "AT3G18400" "AT3G18930" "AT3G18990"
 [553] "AT3G19290" "AT3G19500" "AT3G19510" "AT3G19580" "AT3G19860" "AT3G19910"
 [559] "AT3G20310" "AT3G20770" "AT3G20840" "AT3G20880" "AT3G21270" "AT3G21890"
 [565] "AT3G22760" "AT3G22780" "AT3G22830" "AT3G23060" "AT3G23210" "AT3G23220"
 [571] "AT3G23690" "AT3G24050" "AT3G24120" "AT3G24140" "AT3G24310" "AT3G24520"
 [577] "AT3G25710" "AT3G25730" "AT3G25790" "AT3G25890" "AT3G25990" "AT3G26730"
 [583] "AT3G27010" "AT3G28210" "AT3G28910" "AT3G28920" "AT3G30260" "AT3G30460"
 [589] "AT3G30530" "AT3G42790" "AT3G43240" "AT3G43430" "AT3G44460" "AT3G44750"
 [595] "AT3G45260" "AT3G45610" "AT3G46130" "AT3G46590" "AT3G46600" "AT3G46770"
 [601] "AT3G47500" "AT3G47600" "AT3G47620" "AT3G47640" "AT3G47990" "AT3G48100"
 [607] "AT3G48920" "AT3G49690" "AT3G49760" "AT3G49850" "AT3G49930" "AT3G50260"
 [613] "AT3G50410" "AT3G50650" "AT3G50700" "AT3G50750" "AT3G50870" "AT3G51910"
 [619] "AT3G51960" "AT3G52800" "AT3G53200" "AT3G53600" "AT3G53680" "AT3G53790"
 [625] "AT3G53820" "AT3G54220" "AT3G54320" "AT3G54340" "AT3G54430" "AT3G54620"
 [631] "AT3G54810" "AT3G54990" "AT3G55370" "AT3G55530" "AT3G55730" "AT3G56400"
 [637] "AT3G56850" "AT3G56980" "AT3G57150" "AT3G57230" "AT3G57390" "AT3G57480"
 [643] "AT3G57670" "AT3G57800" "AT3G57920" "AT3G58120" "AT3G58710" "AT3G58780"
 [649] "AT3G60030" "AT3G60080" "AT3G60390" "AT3G60490" "AT3G60530" "AT3G60580"
 [655] "AT3G60630" "AT3G61120" "AT3G61150" "AT3G61630" "AT3G61830" "AT3G61890"
 [661] "AT3G61970" "AT3G62090" "AT3G62240" "AT3G62420" "AT3G62610" "AT4G00050"
 [667] "AT4G00150" "AT4G00270" "AT4G00480" "AT4G00730" "AT4G00760" "AT4G00940"
 [673] "AT4G01120" "AT4G01270" "AT4G01460" "AT4G01680" "AT4G01720" "AT4G02560"
 [679] "AT4G02590" "AT4G02640" "AT4G04450" "AT4G04890" "AT4G05100" "AT4G05170"
 [685] "AT4G05330" "AT4G08150" "AT4G09460" "AT4G11140" "AT4G11660" "AT4G11880"
 [691] "AT4G12020" "AT4G12350" "AT4G13100" "AT4G13640" "AT4G13980" "AT4G14410"
 [697] "AT4G14540" "AT4G14770" "AT4G14920" "AT4G16110" "AT4G16150" "AT4G16430"
 [703] "AT4G16750" "AT4G16780" "AT4G17230" "AT4G17460" "AT4G17500" "AT4G17570"
 [709] "AT4G17750" "AT4G17880" "AT4G18020" "AT4G18390" "AT4G18450" "AT4G18670"
 [715] "AT4G18770" "AT4G18880" "AT4G18890" "AT4G20400" "AT4G21160" "AT4G21340"
 [721] "AT4G21440" "AT4G21550" "AT4G21750" "AT4G22070" "AT4G22250" "AT4G22950"
 [727] "AT4G23450" "AT4G23750" "AT4G23980" "AT4G24020" "AT4G24060" "AT4G24240"
 [733] "AT4G24470" "AT4G25210" "AT4G25410" "AT4G25480" "AT4G25560" "AT4G25610"
 [739] "AT4G26150" "AT4G27240" "AT4G27410" "AT4G27470" "AT4G28110" "AT4G28140"
 [745] "AT4G28270" "AT4G28500" "AT4G28530" "AT4G28610" "AT4G28890" "AT4G29000"
 [751] "AT4G29030" "AT4G29100" "AT4G30080" "AT4G30410" "AT4G30930" "AT4G31060"
 [757] "AT4G31420" "AT4G31550" "AT4G31800" "AT4G31920" "AT4G32040" "AT4G32710"
 [763] "AT4G32800" "AT4G32880" "AT4G32890" "AT4G33450" "AT4G33940" "AT4G34000"
 [769] "AT4G34590" "AT4G34610" "AT4G34680" "AT4G34990" "AT4G35040" "AT4G35270"
 [775] "AT4G35550" "AT4G35580" "AT4G35900" "AT4G36060" "AT4G36160" "AT4G36260"
 [781] "AT4G36540" "AT4G36590" "AT4G36620" "AT4G36730" "AT4G36740" "AT4G36780"
 [787] "AT4G36870" "AT4G36900" "AT4G36920" "AT4G36930" "AT4G36990" "AT4G37130"
 [793] "AT4G37180" "AT4G37260" "AT4G37490" "AT4G37650" "AT4G37730" "AT4G37740"
 [799] "AT4G37750" "AT4G37780" "AT4G37790" "AT4G37850" "AT4G37940" "AT4G38000"
 [805] "AT4G38340" "AT4G38620" "AT4G38960" "AT4G39070" "AT4G39780" "AT4G40060"
 [811] "AT5G01160" "AT5G01200" "AT5G01310" "AT5G01380" "AT5G01860" "AT5G01960"
 [817] "AT5G01980" "AT5G02460" "AT5G02470" "AT5G02840" "AT5G03150" "AT5G03510"
 [823] "AT5G03680" "AT5G03720" "AT5G03740" "AT5G03780" "AT5G04150" "AT5G04340"
 [829] "AT5G04410" "AT5G04760" "AT5G05410" "AT5G05610" "AT5G05790" "AT5G06100"
 [835] "AT5G06160" "AT5G06250" "AT5G06490" "AT5G06510" "AT5G06710" "AT5G06800"
 [841] "AT5G06960" "AT5G07040" "AT5G07100" "AT5G07500" "AT5G07580" "AT5G07680"
 [847] "AT5G08130" "AT5G08330" "AT5G08520" "AT5G08750" "AT5G09330" "AT5G09410"
 [853] "AT5G09460" "AT5G09740" "AT5G10030" "AT5G10140" "AT5G10280" "AT5G10510"
 [859] "AT5G10970" "AT5G11260" "AT5G11510" "AT5G11590" "AT5G12310" "AT5G12330"
 [865] "AT5G12850" "AT5G12870" "AT5G13080" "AT5G13180" "AT5G13330" "AT5G13790"
 [871] "AT5G13820" "AT5G13910" "AT5G14340" "AT5G14540" "AT5G14750" "AT5G14960"
 [877] "AT5G15130" "AT5G15150" "AT5G15160" "AT5G15210" "AT5G15790" "AT5G15830"
 [883] "AT5G15840" "AT5G15850" "AT5G16070" "AT5G16470" "AT5G16540" "AT5G16560"
 [889] "AT5G16600" "AT5G16770" "AT5G16820" "AT5G17260" "AT5G17430" "AT5G17490"
 [895] "AT5G17600" "AT5G17800" "AT5G18270" "AT5G18450" "AT5G18550" "AT5G18560"
 [901] "AT5G18680" "AT5G18830" "AT5G19430" "AT5G19790" "AT5G20220" "AT5G20240"
 [907] "AT5G20510" "AT5G20730" "AT5G20910" "AT5G22570" "AT5G22890" "AT5G23000"
 [913] "AT5G23090" "AT5G24110" "AT5G24800" "AT5G24930" "AT5G25160" "AT5G25190"
 [919] "AT5G25220" "AT5G25810" "AT5G25830" "AT5G26210" "AT5G26610" "AT5G26660"
 [925] "AT5G26930" "AT5G28300" "AT5G28650" "AT5G28770" "AT5G29000" "AT5G37020"
 [931] "AT5G37260" "AT5G38560" "AT5G38800" "AT5G39550" "AT5G39610" "AT5G39660"
 [937] "AT5G39760" "AT5G39820" "AT5G40330" "AT5G40350" "AT5G40710" "AT5G41350"
 [943] "AT5G41410" "AT5G41920" "AT5G42200" "AT5G42520" "AT5G42630" "AT5G42780"
 [949] "AT5G43170" "AT5G43270" "AT5G43410" "AT5G44080" "AT5G44160" "AT5G44190"
 [955] "AT5G44210" "AT5G45050" "AT5G45710" "AT5G46350" "AT5G46590" "AT5G46760"
 [961] "AT5G46880" "AT5G47230" "AT5G47370" "AT5G47390" "AT5G47610" "AT5G47640"
 [967] "AT5G48150" "AT5G48250" "AT5G48560" "AT5G48670" "AT5G49450" "AT5G49520"
 [973] "AT5G49620" "AT5G50010" "AT5G51910" "AT5G51990" "AT5G52010" "AT5G52020"
 [979] "AT5G52170" "AT5G52260" "AT5G52510" "AT5G52660" "AT5G52830" "AT5G53200"
 [985] "AT5G53210" "AT5G53290" "AT5G53660" "AT5G53980" "AT5G54230" "AT5G54470"
 [991] "AT5G54680" "AT5G55970" "AT5G56620" "AT5G56780" "AT5G56860" "AT5G57150"
 [997] "AT5G57390" "AT5G57620" "AT5G57660" "AT5G58010" "AT5G58900" "AT5G59000"
[1003] "AT5G59340" "AT5G59430" "AT5G59450" "AT5G59780" "AT5G59820" "AT5G60120"
[1009] "AT5G60200" "AT5G60450" "AT5G60690" "AT5G60850" "AT5G60890" "AT5G60910"
[1015] "AT5G61190" "AT5G61420" "AT5G61430" "AT5G61470" "AT5G61590" "AT5G61600"
[1021] "AT5G61620" "AT5G61850" "AT5G61890" "AT5G61940" "AT5G62000" "AT5G62020"
[1027] "AT5G62320" "AT5G62380" "AT5G62430" "AT5G62470" "AT5G62610" "AT5G62940"
[1033] "AT5G63780" "AT5G63790" "AT5G64060" "AT5G64220" "AT5G64340" "AT5G64610"
[1039] "AT5G65050" "AT5G65060" "AT5G65210" "AT5G65230" "AT5G65310" "AT5G65320"
[1045] "AT5G65510" "AT5G65640" "AT5G65790" "AT5G66070" "AT5G66300" "AT5G66320"
[1051] "AT5G66350" "AT5G66700" "AT5G66730" "AT5G66770" "AT5G66940" "AT5G67000"
[1057] "AT5G67110" "AT5G67190" "AT5G67300" "AT5G67450" "AT5G67580"

TDCor documentation built on May 30, 2017, 7:27 a.m.