TF: Table of 1834 Arabidopsis Transcription factors

Description Usage Source References Examples

Description

TF is a dataframe with two columns. The first column contains the AGI gene code of 1834 genes encoding Arabidopsis transcription factors. The second column contains the associated gene names.

Usage

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data("TF")

Source

Data published on the Agris database website (http://arabidopsis.med.ohio-state.edu/AtTFDB/).

References

Davuluri et al. (2003), AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors, BMC Bioinformatics, 4:25

Examples

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# Load the database
data(TF)

# Obtain the transcription factors for which data is available in the LR dataset
# i.e. present on ATH1 chip and differentially expressed.
data(LR_dataset)
clean.at(LR_dataset,TF[,1])


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