TE: Insertion/Deletion Dynamics for Transposable Elements
Version 0.1-1

Provides functions to estimate the insertion and deletion rates of transposable element (TE) families. The estimation of insertion rate consists of an improved estimate of the age distribution that takes into account random mutations, and an adjustment by the deletion rate. A hypothesis test for a uniform insertion rate is also implemented. This package implements the methods proposed in Dai et al (2018).

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Package details

AuthorXiongtao Dai [aut, cre, cph], Hao Wang [aut], Jan Dvorak [ctb], Jeffrey Bennetzen [ctb], Hans-Georg Mueller [ctb]
Date of publication2018-01-16 10:44:11 UTC
MaintainerXiongtao Dai <[email protected]>
LicenseMIT + file LICENSE
Package repositoryView on CRAN
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TE documentation built on Jan. 20, 2018, 9:11 a.m.