TE: TE: Insertion/Deletion Dynamics for Transposable Elements
In TE: Insertion/Deletion Dynamics for Transposable Elements
Description
Details
Author(s)
References
Description
TE package for analyzing insertion/deletion dynamics for transposable elements
Details
Provides functions to estimate the insertion and deletion rates of
transposable element (TE) families. The estimation of insertion rate
consists of an improved estimate of the age distribution that takes into
account random mutations, and an adjustment by the deletion rate. This
package includes functions EstDynamics and EstDynamics2 for
analyzing the TE divergence, and visualization functions such as
PlotFamilies and SensitivityPlot.
This package implements the methods proposed in Dai et al (2018+).
Author(s)
Xiongtao Dai xdai@iastate.edu,
Hao Wang
Jan Dvorak
Jeffrey Bennetzen
Hans-Georg Mueller
Maintainer: Xiongtao Dai xdai@iastate.edu
References
Luo, Ming-Cheng, et al. (2017) "Genome sequence of the progenitor of the wheat D genome Aegilops tauschii." Nature 551.7681.
Dai, X., Wang, H., Dvorak, J., Bennetzen, J., Mueller, H.-G. (2018). "Birth and Death of LTR Retrotransposons in Aegilops tauschii". Genetics
TE documentation built on May 1, 2019, 10:13 p.m.
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Description Details Author(s) References
Description
TE package for analyzing insertion/deletion dynamics for transposable elements
Details
Provides functions to estimate the insertion and deletion rates of
transposable element (TE) families. The estimation of insertion rate
consists of an improved estimate of the age distribution that takes into
account random mutations, and an adjustment by the deletion rate. This
package includes functions EstDynamics and EstDynamics2 for
analyzing the TE divergence, and visualization functions such as
PlotFamilies and SensitivityPlot.
This package implements the methods proposed in Dai et al (2018+).
Author(s)
Xiongtao Dai xdai@iastate.edu, Hao Wang Jan Dvorak Jeffrey Bennetzen Hans-Georg Mueller
Maintainer: Xiongtao Dai xdai@iastate.edu
References
Luo, Ming-Cheng, et al. (2017) "Genome sequence of the progenitor of the wheat D genome Aegilops tauschii." Nature 551.7681.
Dai, X., Wang, H., Dvorak, J., Bennetzen, J., Mueller, H.-G. (2018). "Birth and Death of LTR Retrotransposons in Aegilops tauschii". Genetics
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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