This data file contains the LTR retrotransposons in Ae. tauschii.
A data frame with 18024 rows and 12 columns. Each row corresponds to a unique LTR retrotransposon, and each column corresponds to a feature of the LTR-RT. The columns are:
LTR retrotransposon sequence ID
Length of each LTR
Number of mismatches
Divergence, as defined by (# of mismatches) / (LTR length)
Start location in bp
Ending location in bp
LTR retrotransposon Family ID
Super family membership
Whether the LTR-RT is near a gene that is colinear with wild emmer (TRUE) or not (FALSE)
Whether the LTR-RT is near the start codon (1) or not (-1)
Log distance to the nearest gene in bp
Distance to the nearest gene in bp
Luo, Ming-Cheng, et al. (2017) "Genome sequence of the progenitor of the wheat D genome Aegilops tauschii." Nature 551.7681.
Dvorak, J., L. Wang, T. Zhu, C. M. Jorgensen, K. R. Deal et al., (2018) "Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size". The Plant Journal 95: 487-503.
Dai, X., Wang, H., Dvorak, J., Bennetzen, J., Mueller, H.-G. (2018). "Birth and Death of LTR Retrotransposons in Aegilops tauschii". Genetics
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