TE
Insertion/Deletion Dynamics for Transposable Elements

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nbLackOfFitKL: Calcualte the KL divergence of a negative binomial fit to the...

nbLackOfFitKL: Calcualte the KL divergence of a negative binomial fit to the...
In TE: Insertion/Deletion Dynamics for Transposable Elements

Description Usage Arguments Examples

Description

Calcualte the KL divergence of a negative binomial fit to the mismatch data.

Usage

1
nbLackOfFitKL(res)

Arguments

res

A TEfit object.

Examples

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# Analyze Gypsy family 24 (Nusif)
data(AetLTR)
dat <- subset(AetLTR, GroupID == 24 & !is.na(Chr))
set.seed(1)
res1 <- EstDynamics(dat$Mismatch, dat$UngapedLen, plotFit=TRUE, plotSensitivity=FALSE, pause=FALSE)
nbLackOfFitKL(res1)

TE documentation built on May 1, 2019, 10:13 p.m.

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