Man pages for TFactSR
Enrichment Approach to Predict Which Transcription Factors are Regulated
| AtCatalog | A list of TF-target genes (TG) in Arabidopsis thaliana. |
| calculateEnrichmentTest | performs enrichment analysis |
| calculateEvalue | calculates E-value |
| calculateFDRBH | calculates FDR by Benjamini and Hochberg method |
| calculateQvalue | calculates Q-value |
| calculateRC | calculates Random Control (RC) |
| calculateTFactS | calculates TFactS |
| catalog | A list of TF-target genes (TG) in TFactS. |
| DEGs | An example list of DEGs from DEMO data in TFactS. |
| DEGs39 | An example list of 39 DEGs from DEMO data in TFactS. |
| example.df | An example result of enrichment analysis |
| example.list | An example list of result of enrichment analysis |
| extractTFTG | extracts transcription factor (TF) and target gene (TG)... |
| FASTcalculateRC | calculates Random Control (RC) fastly? |
| formatET | formats the result of enrichment test (ET) |
| formatRC | formats the result of Random Control (RC) |
| GenesUp_SH1H | An example list of 74 DEGs from AtGenExpress stress dataset. |
| TFactSR | TFactSR: A package for identifying critical transcription... |
