formatRC: formats the result of Random Control (RC)

In TFactSR: Enrichment Approach to Predict Which Transcription Factors are Regulated

formats the result of Random Control (RC)

Description

This function formats the result of Random Control (RC) with random simulation based on Fisher's exact test

Usage

formatRC(df, list, nRep)

Arguments

df	a data frame of ET including E-values, FDR-BH, and Q-values
list	a list of the result of RC (ncol = 2)
nRep	the number of random selections (negative control)

Value

data.frame

Author(s)

Atsushi Fukushima

Examples

data(example.df)
data(example.list)
nRep <- 100
res <- formatRC(example.df, example.list, nRep)

TFactSR documentation built on Aug. 31, 2023, 5:09 p.m.