calculateQvalue: calculates Q-value

In TFactSR: Enrichment Approach to Predict Which Transcription Factors are Regulated

calculates Q-value

Description

This function calculates Q-value based on Storey.

Usage

calculateQvalue(df, lambda = seq(0.05, 0.5, 0.01))

Arguments

df	a data frame containng p-values
lambda	a vector of the lambda values utilized to obtain pi0.lambda

Value

data.frame

Author(s)

Atsushi Fukushima

References

Storey JD, The Annals of Statistics 31:2013-2035 (2003)

Examples

data(example.df)
p.value <- example.df$p.value
df <- data.frame(p.value = p.value)
res <- calculateQvalue(df)

TFactSR documentation built on Aug. 31, 2023, 5:09 p.m.