Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'

as.list.sdreport | Convert estimates to original list format. |

benchmark | Benchmark parallel templates |

checkConsistency | Check consistency and Laplace accuracy |

compile | Compile a C++ template to DLL suitable for MakeADFun. |

config | Get or set internal configuration variables |

confint.tmbprofile | Profile based confidence intervals. |

dynlib | Add dynlib extension |

gdbsource | Source R-script through gdb to get backtrace. |

MakeADFun | Construct objective functions with derivatives based on a... |

newton | Generalized newton optimizer. |

newtonOption | Set newton options for a model object. |

normalize | Normalize process likelihood using the Laplace approximation. |

oneStepPredict | Calculate one-step-ahead (OSA) residuals for a latent... |

openmp | Control number of openmp threads. |

plot.tmbprofile | Plot likelihood profile. |

precompile | Precompile the TMB library in order to speed up compilation... |

print.checkConsistency | Print output from 'checkConsistency' |

print.sdreport | Print brief model summary |

Rinterface | Create minimal R-code corresponding to a cpp template. |

runExample | Run one of the test examples. |

runSymbolicAnalysis | Run symbolic analysis on sparse Hessian |

sdreport | General sdreport function. |

summary.checkConsistency | Summarize output from 'checkConsistency' |

summary.sdreport | summary tables of model parameters |

template | Create cpp template to get started. |

tmbprofile | Adaptive likelihood profiling. |

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