gene_color: Merge Genes with Color Information Based on Up/Down...
In TransProR: Analysis and Visualization of Multi-Omics Data

gene_color

R Documentation

Merge Genes with Color Information Based on Up/Down Regulation

Description

This function merges selected genes with differential expression data and adds a color column based on up/down regulation.

Usage

gene_color(selected_genes, DEG_deseq2, up_color, down_color)

Arguments

`selected_genes`	A data frame containing selected genes with a column named "Symble".
`DEG_deseq2`	A data frame containing differential expression data with a column named "Symble" and a column named "change" indicating up/down regulation.
`up_color`	The color to assign to genes with up-regulated expression.
`down_color`	The color to assign to genes with down-regulated expression.

Value

A data frame containing merged genes with an additional color column.

Examples

selected_genes_deseq2_file <- system.file("extdata",
                                          "selected_genes_deseq2.rds",
                                          package = "TransProR")
selected_genes_deseq2 <- readRDS(selected_genes_deseq2_file)
Diff_deseq2_file <- system.file("extdata", "Diff_deseq2.rds", package = "TransProR")
Diff_deseq2 <- readRDS(Diff_deseq2_file)

result_deseq2 <- gene_color(selected_genes_deseq2, Diff_deseq2, "#0000EE", "#fc4746")

TransProR documentation built on April 4, 2025, 3:16 a.m.