TreeBUGS: Hierarchical Multinomial Processing Tree Modeling

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User-friendly analysis of hierarchical multinomial processing tree (MPT) models that are often used in cognitive psychology. Implements the latent-trait MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model heterogeneity of participants. MPT models are conveniently specified by an .eqn-file as used by other MPT software and data are provided by a .csv-file or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides tests of heterogeneity and MPT-tailored summaries and plotting functions.

Author
Daniel Heck [aut, cre], Nina Arnold [aut, dtc], Denis Arnold [aut]
Date of publication
2016-09-15 15:46:30
Maintainer
Daniel Heck <heck@uni-mannheim.de>
License
GPL-2
Version
0.6.3
URLs

View on CRAN

Man pages

arnold2013
Data of a Source-Monitoring Experiment
betaMPT
Fit a Hierarchical Beta-MPT Model
betaMPTcpp
C++ Sampler for Hierarchical Beta-MPT Model
betweenSubjectMPT
Between-Subject Comparison of Parameters
extendMPT
Extend MCMC Sampling for MPT Model
genBetaMPT
Generate Data for Beta MPT Models
genMPT
Generate MPT Frequencies
genTraitMPT
Generate Data for Trait MPT Models
getGroupMeans
Get Mean Group Estimates
getParam
Get Parameter Posterior Statistics
plot
Plot Convergence for Hierarchical MPT Models
plotDistribution
Plot Distribution of Individual Estimates
plotFit
Plot Posterior Predictive Mean Frequencies
plotFreq
Plot Raw Frequencies
plotParam
Plot Parameter Estimates
plotPriorPost
Plot Prior vs. Posterior Distribution
posteriorPredictive
Get Posterior Predictive Samples
PPP
Compute Posterior Predictive P-Values
readEQN
Read multiTree files
simpleMPT
C++ Sampler for Standard MPT Model
summarizeMPT
Summarize JAGS Output for Hierarchical MPT Models
testHetChi
Chi-Square Test of Heterogeneity
testHetPerm
Permutation Test of Heterogeneity
traitMPT
Fit a Hierarchical latent-trait MPT Model
TreeBUGS
TreeBUGS: Hierarchical Multinomial Processing Tree Modeling

Files in this package

TreeBUGS
TreeBUGS/inst
TreeBUGS/inst/CITATION
TreeBUGS/inst/MPTmodels
TreeBUGS/inst/MPTmodels/2htm.eqn
TreeBUGS/inst/MPTmodels/2htsm.eqn
TreeBUGS/inst/doc
TreeBUGS/inst/doc/TreeBUGS_1_intro.Rmd
TreeBUGS/inst/doc/TreeBUGS_1_intro.R
TreeBUGS/inst/doc/TreeBUGS_2_extended.Rmd
TreeBUGS/inst/doc/TreeBUGS_1_intro.html
TreeBUGS/inst/doc/TreeBUGS_2_extended.R
TreeBUGS/inst/doc/TreeBUGS_2_extended.html
TreeBUGS/src
TreeBUGS/src/Makevars
TreeBUGS/src/betaMPT.cpp
TreeBUGS/src/Makevars.win
TreeBUGS/src/RcppExports.cpp
TreeBUGS/NAMESPACE
TreeBUGS/NEWS
TreeBUGS/data
TreeBUGS/data/arnold2013.RData
TreeBUGS/R
TreeBUGS/R/arnold2013.R
TreeBUGS/R/covariateHandling.R
TreeBUGS/R/plotPriorPost.R
TreeBUGS/R/getGroupMeans.R
TreeBUGS/R/parseRestrictions.R
TreeBUGS/R/corSamples.R
TreeBUGS/R/TreeBUGS-package.R
TreeBUGS/R/checkFunctions.R
TreeBUGS/R/covCorrelationString.R
TreeBUGS/R/callingSampler.R
TreeBUGS/R/posteriorPredictive.R
TreeBUGS/R/printMPT.R
TreeBUGS/R/thetaHandling.R
TreeBUGS/R/genDataTrait.R
TreeBUGS/R/renameBUGSoutput.R
TreeBUGS/R/testHetChi.R
TreeBUGS/R/genDataBeta.R
TreeBUGS/R/getTransformedParameters.R
TreeBUGS/R/covPredictorHandling.R
TreeBUGS/R/genDataMPT.R
TreeBUGS/R/T1perGroup.R
TreeBUGS/R/getParam.R
TreeBUGS/R/plotFit.R
TreeBUGS/R/writeSummaryToFile.R
TreeBUGS/R/betweenSubjects.R
TreeBUGS/R/testHetPerm.R
TreeBUGS/R/summarizeMCMC.R
TreeBUGS/R/fitSimpleMPT.R
TreeBUGS/R/covDataRead.R
TreeBUGS/R/covFactor.R
TreeBUGS/R/fitBetaMPTcpp.R
TreeBUGS/R/fitModel.R
TreeBUGS/R/RcppExports.R
TreeBUGS/R/extendMPT.R
TreeBUGS/R/plotDistribution.R
TreeBUGS/R/makeModelDescription.R
TreeBUGS/R/fitModelCpp.R
TreeBUGS/R/readEQN.R
TreeBUGS/R/CollectionOfInputProcessingFunctions.R
TreeBUGS/R/plotParameters.R
TreeBUGS/R/fitBetaMPT.R
TreeBUGS/R/fitTraitMPT.R
TreeBUGS/R/parseEQN.R
TreeBUGS/R/genDataCheck.R
TreeBUGS/R/plotFrequencies.R
TreeBUGS/R/summarizeMPT.R
TreeBUGS/R/PPP.R
TreeBUGS/R/plotConvergence.R
TreeBUGS/vignettes
TreeBUGS/vignettes/TreeBUGS_1_intro.Rmd
TreeBUGS/vignettes/TreeBUGS_2_extended.Rmd
TreeBUGS/MD5
TreeBUGS/build
TreeBUGS/build/vignette.rds
TreeBUGS/DESCRIPTION
TreeBUGS/man
TreeBUGS/man/getGroupMeans.Rd
TreeBUGS/man/posteriorPredictive.Rd
TreeBUGS/man/testHetChi.Rd
TreeBUGS/man/plotDistribution.Rd
TreeBUGS/man/summarizeMPT.Rd
TreeBUGS/man/simpleMPT.Rd
TreeBUGS/man/plotPriorPost.Rd
TreeBUGS/man/readEQN.Rd
TreeBUGS/man/testHetPerm.Rd
TreeBUGS/man/genTraitMPT.Rd
TreeBUGS/man/extendMPT.Rd
TreeBUGS/man/plotParam.Rd
TreeBUGS/man/betaMPTcpp.Rd
TreeBUGS/man/genBetaMPT.Rd
TreeBUGS/man/getParam.Rd
TreeBUGS/man/traitMPT.Rd
TreeBUGS/man/betaMPT.Rd
TreeBUGS/man/arnold2013.Rd
TreeBUGS/man/plotFit.Rd
TreeBUGS/man/genMPT.Rd
TreeBUGS/man/betweenSubjectMPT.Rd
TreeBUGS/man/plot.Rd
TreeBUGS/man/plotFreq.Rd
TreeBUGS/man/PPP.Rd
TreeBUGS/man/TreeBUGS.Rd