dot-SPRPairDeO: SPR approximation via Oliveira Martins _et al._ (2008)
In TreeDist: Calculate and Map Distances Between Phylogenetic Trees

.SPRPairDeO

R Documentation

SPR approximation via Oliveira Martins et al. (2008)

Description

SPR approximation via Oliveira Martins et al. (2008)

Usage

.SPRPairDeO(tree1, tree2, check = TRUE)

Examples

# de Oliveira Martins et al 2008, fig. 7
tree1 <- ape::read.tree(text = "((1, 2), ((a, b), (c, d)), (3, (4, (5, (6, 7)))));")
tree2 <- ape::read.tree(text = "((1, 2), 3, (4, (5, (((a, b), (c, d)), (6, 7)))));")
oPar <- par(mfrow =c(2, 1), mar = rep(0, 4))
plot(tree1)
plot(tree2)
par(oPar)
SPRDist(tree1, tree2, method = "deO")

TreeDist documentation built on June 10, 2026, 5:06 p.m.