SplitEntropy: Entropy of two splits

In TreeDist: Calculate and Map Distances Between Phylogenetic Trees

Entropy of two splits

Description

Calculate the entropy, joint entropy, entropy distance and information content of two splits, treating each split as a division of n leaves into two groups. Further details are available in a vignette, \insertCiteMackay2003;textualTreeDist and \insertCiteMeila2007;textualTreeDist.

Usage

SplitEntropy(split1, split2 = split1)

Arguments

split1, split2

Logical vectors listing leaves in a consistent order, identifying each leaf as a member of the ingroup (TRUE) or outgroup (FALSE) of the split in question.

Value

A numeric vector listing, in bits:

• H1 The entropy of split 1;

• H2 The entropy of split 2;

• H12 The joint entropy of both splits;

• I The mutual information of the splits;

• Hd The entropy distance (variation of information) of the splits.

Author(s)

Martin R. Smith ([e-mail])

References

\insertAllCited

See Also

Other information functions: SplitSharedInformation(), TreeInfo

Examples

A <- TRUE
B <- FALSE
SplitEntropy(c(A, A, A, B, B, B), c(A, A, B, B, B, B))

TreeDist documentation built on Oct. 26, 2023, 1:07 a.m.