TreeDistPlot: Plot a simple tree

In TreeDist: Calculate and Map Distances Between Phylogenetic Trees

Plot a simple tree

Description

Convenience plotting function used in vignettes and documentation.

Usage

TreeDistPlot(
  tr,
  title = NULL,
  bold = NULL,
  leaveRoom = FALSE,
  prune = integer(0),
  graft = integer(0),
  edge.color = "black",
  edge.width = NULL,
  ...
)

Arguments

tr	A tree of class phylo, with leaves labelled as integers.
title	main title for the plot.
bold	Integer specifying which leaves to print in bold.
leaveRoom	Logical specifying whether to leave space to print tree distances beneath the plotted tree.
prune, graft	Integer vectors specifying which edges to highlight as pruned and grafted.
edge.color	Additional parameter to plot.phylo; will be overridden by prune and graft as requested.
edge.width, ...	Additional parameters to plot.phylo.

Author(s)

Martin R. Smith ([e-mail])

TreeDist documentation built on Sept. 11, 2024, 9:10 p.m.