TwoPhaseInd: Estimate Gene-Treatment Interaction Exploiting Randomization

Share:

Estimation of gene-treatment interactions in randomized clinical trials exploiting gene-treatment independence.

Author
James Dai [aut, cre], Xiaoyu Wang [aut]
Date of publication
2016-03-17 23:13:20
Maintainer
James Dai <jdai@fredhutch.org>
License
GPL (>= 2)
Version
1.1.1

View on CRAN

Man pages

aco1arm
A function to estimate parameters in augmented case-only...
aco2arm
A function to estimate parameters in augmented case-only...
acoarm
A function to estimate parameters in Cox proportional hazard...
acodata
A dataset from the STEP trial to study the interactions...
caseonly
A function to deal with case-only designs
char2num
A function used in acoarm to transform categorical variable...
mele
function to compute the maximum estimated likelihood...
remove_missingdata
A function used in acoarm to remove missing data
remove_rarevariants
A function used in spmle and acoarm to remove rare-variant...
spmle
function to compute the semiparametric maximum likelihood...
whiBioMarker
An example dataset to demostrate the usage of MELE and SPMLE

Files in this package

TwoPhaseInd
TwoPhaseInd/inst
TwoPhaseInd/inst/doc
TwoPhaseInd/inst/doc/TwoPhaseInd.R
TwoPhaseInd/inst/doc/TwoPhaseInd.pdf
TwoPhaseInd/inst/doc/TwoPhaseInd.Rnw
TwoPhaseInd/src
TwoPhaseInd/src/profile_NR.h
TwoPhaseInd/src/profile_NR.c
TwoPhaseInd/NAMESPACE
TwoPhaseInd/data
TwoPhaseInd/data/whiBioMarker.rda
TwoPhaseInd/data/acodata.rda
TwoPhaseInd/R
TwoPhaseInd/R/caseonly.R
TwoPhaseInd/R/char2num.R
TwoPhaseInd/R/mele.R
TwoPhaseInd/R/aco2arm.R
TwoPhaseInd/R/acoarm.R
TwoPhaseInd/R/spmle.R
TwoPhaseInd/R/zzz.TwoPhaseInd.R
TwoPhaseInd/R/aco1arm.R
TwoPhaseInd/R/remove_rarevariants.R
TwoPhaseInd/R/phase2glm.R
TwoPhaseInd/R/remove_missingdata.R
TwoPhaseInd/R/estlik_fun.R
TwoPhaseInd/vignettes
TwoPhaseInd/vignettes/figure1new.png
TwoPhaseInd/vignettes/TwoPhaseInd.bib
TwoPhaseInd/vignettes/TwoPhaseInd.Rnw
TwoPhaseInd/MD5
TwoPhaseInd/build
TwoPhaseInd/build/vignette.rds
TwoPhaseInd/DESCRIPTION
TwoPhaseInd/man
TwoPhaseInd/man/acoarm.Rd
TwoPhaseInd/man/mele.Rd
TwoPhaseInd/man/char2num.Rd
TwoPhaseInd/man/whiBioMarker.Rd
TwoPhaseInd/man/aco2arm.Rd
TwoPhaseInd/man/spmle.Rd
TwoPhaseInd/man/caseonly.Rd
TwoPhaseInd/man/acodata.Rd
TwoPhaseInd/man/aco1arm.Rd
TwoPhaseInd/man/remove_rarevariants.Rd
TwoPhaseInd/man/remove_missingdata.Rd