loadSampleRegions: loadSampleRegions
In VSE: Variant Set Enrichment
Description
Usage
Details
Value
Examples
View source: R/loadSampleRegions.R
Description
The sample bed files are DNAse-seq, ChIP-seq for H3K4me1, H3K4me3, H3K27ac, H3K27me3 and H3K36me3 for MCF7 cells. The data are obtained from ENCODE project. There is also one sampleSheet.csv which is the sample sheet for the bed regions in the format similar to ChIPQC or DiffBind requirement.
Usage
1
Details
This function will download sample bed files from www.hansenhelab.org/VSE/sample_regions in /VSE_samples
Value
A directory names VSE_samples that will contain 6 bed files and 1 sampleSheet.csv
Examples
1
2
3
4
## Not run:
loadSampleRegions()
## End(Not run)
VSE documentation built on May 2, 2019, 4 p.m.
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Description Usage Details Value Examples
View source: R/loadSampleRegions.R
Description
The sample bed files are DNAse-seq, ChIP-seq for H3K4me1, H3K4me3, H3K27ac, H3K27me3 and H3K36me3 for MCF7 cells. The data are obtained from ENCODE project. There is also one sampleSheet.csv which is the sample sheet for the bed regions in the format similar to ChIPQC or DiffBind requirement.
Usage
1 |
Details
This function will download sample bed files from www.hansenhelab.org/VSE/sample_regions in /VSE_samples
Value
A directory names VSE_samples that will contain 6 bed files and 1 sampleSheet.csv
Examples
1 2 3 4 | ## Not run:
loadSampleRegions()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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