intersectMatrix: intersectMatrix

In VSE: Variant Set Enrichment

Description

This function will count the intersection tally of AVS and genomic regions

Usage

intersectMatrix(avs, regions, ...)

Arguments

avs	A GRanges object which is outputted by loadLd function
regions	A data frame. The data frame contains sample sheet identical to DiffBind or ChIPQC input sample sheets
...	Heatmap arguments

Examples

## Not run: 
intersectMatrix(avs,
                regions=samples,
                col=c("white","grey10"),
                scale="none",
                margins=c(10,5),
                cexRow = 1,
                cexCol = 0.5,
                Rowv=NA,
                Colv=NA)

## End(Not run)

VSE documentation built on May 2, 2019, 4 p.m.