makeMRVS: makeMRVS

In VSE: Variant Set Enrichment

Description

This function will calculate matching random variant sets (MRVS) idential to AVS

Usage

makeMRVS(avs, bgSize = 100, mc.cores = 6)

Arguments

avs	A GRanges object which is outputted by makeAVS function
bgSize	An integer for the number of MRVS. Default: 100
mc.cores	Number of cores to use. Default: 8

Examples

## Not run: 
ld <- loadLd("ld.csv", type="raggr")
avs <- makeAVS(ld)
makeMRVS(avs, bgSize=100, mc.cores=8)

## End(Not run)
#As an example, we have added MRVS (size=200) for Breast Cancer AVS.
load(file.path(system.file("extdata", "bca.mrvs.200.Rda", package="VSE")))

VSE documentation built on May 2, 2019, 4 p.m.