variantSetEnrichment: variantSetEnrichment

Description Usage Arguments Examples

View source: R/variantSetEnrichment.R

Description

This function will calculate matching random variant sets (MRVS) idential to AVS

Usage

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variantSetEnrichment(avs, mrvs, regions)

Arguments

avs

A GRangesList object which is outputted by makeAVS function

mrvs

A list of GRangesList objects outputted by makeMRVS function

regions

A data frame. The data frame contains sample sheet identical to DiffBind or ChIPQC input sample sheets

Examples

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## Not run: 
variantSetEnrichment(avs, mrvs, regions=samples)
#We have included the output from our example analysis with the package. \
You can load the example VariantSetEnrichment output by typing:
load(file.path(system.file("extdata", "vse_output.Rda", package="VSE")))

## End(Not run)

VSE documentation built on May 30, 2017, 8:14 a.m.