variantSetEnrichment: variantSetEnrichment

In VSE: Variant Set Enrichment

Description

This function will calculate matching random variant sets (MRVS) idential to AVS

Usage

variantSetEnrichment(avs, mrvs, regions)

Arguments

avs	A GRangesList object which is outputted by makeAVS function
mrvs	A list of GRangesList objects outputted by makeMRVS function
regions	A data frame. The data frame contains sample sheet identical to DiffBind or ChIPQC input sample sheets

Examples

## Not run: 
variantSetEnrichment(avs, mrvs, regions=samples)
#We have included the output from our example analysis with the package. \
You can load the example VariantSetEnrichment output by typing:
load(file.path(system.file("extdata", "vse_output.Rda", package="VSE")))

## End(Not run)

VSE documentation built on May 2, 2019, 4 p.m.