YuGene: A Simple Approach to Scale Gene Expression Data Derived from Different Platforms for Integrated Analyses

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Simple method for comparison of gene expression generated across different experiments, and on different platforms; that does not require global renormalization, and is not restricted to comparison of identical probes. YuGene works on a range of microarray dataset distributions, such as between manufacturers. The resulting output allows direct comparisons of gene expression between experiments and experimental platforms.

Author
Kim-Anh Le Cao, Florian Rohart, Leo McHugh, Othmar Korn, Christine A. Wells
Date of publication
2015-11-19 11:02:18
Maintainer
Florian Rohart <f.rohart@uq.edu.au>
License
GPL (>= 2)
Version
1.1.5

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Man pages

array
Combination of multiple array experiments
ascorbate
Ascorbate Experiment
pca.default
Principal Components Analysis from the mixOmics package
pca.YuGene
Principal component analysis for the 'YuGene' class.
YuGene
YuGene: A simple method for comparing gene expression across...
YuGene-package
Transforms expression datasets to cumulative proportion for...

Files in this package

YuGene
YuGene/NAMESPACE
YuGene/NEWS
YuGene/data
YuGene/data/array.rda
YuGene/data/ascorbate.rda
YuGene/data/datalist
YuGene/R
YuGene/R/study_split.R
YuGene/R/pca.YuGene.R
YuGene/R/YuGene.R
YuGene/MD5
YuGene/DESCRIPTION
YuGene/man
YuGene/man/YuGene-package.Rd
YuGene/man/ascorbate.Rd
YuGene/man/array.Rd
YuGene/man/pca.YuGene.Rd
YuGene/man/pca.default.Rd
YuGene/man/YuGene.Rd