acm4r: Align-and-Count Method comparisons of RFLP data

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Fragment lengths or molecular weights from pairs of lanes are compared, and a number of matching bands are calculated using the Align-and-Count Method.

Author
Andrea Benedetti, Sahir Rai Bhatnagar, Xiaofei Zhao
Date of publication
2013-12-28 06:59:21
Maintainer
Andrea Benedetti <andrea.benedetti@mcgill.ca>
License
GPL
Version
1.0

View on CRAN

Man pages

acm.file.checkdelete
acm.file.checkdelete
acm.file.copy
acm.file.copy (the modified file.copy function in acm)
acm.file.exists
acm.file.exists (the modified file.exists function in acm)
acmwrapall
acmwrapall (acm warp all)
call_acm
Align-and-Count Method comparisons of RFLP data
call_bablbs
BABLBS (Band Added Band Lost Band Substituted)
call_erra
Error Analysis for 1D Electrophoresis Gels
call_gd1
Genetic Distance 1
call_gd2
Genetic Distance 2
clusters
Clustering
experiments.in
Sample fingerprint file
replicates.in
Sample replicate file

Files in this package

acm4r
acm4r/NAMESPACE
acm4r/data
acm4r/data/experiments.in.txt.gz
acm4r/data/replicates.in.txt.gz
acm4r/R
acm4r/R/call_erra.R
acm4r/R/clusters.R
acm4r/R/acmwrapall.R
acm4r/R/call_gd2.R
acm4r/R/acm.file.R
acm4r/R/call_gd1.R
acm4r/R/replicates.in.r
acm4r/R/experiments.in.r
acm4r/R/call_bablbs.R
acm4r/R/acm.R
acm4r/MD5
acm4r/DESCRIPTION
acm4r/man
acm4r/man/replicates.in.Rd
acm4r/man/acm.file.copy.Rd
acm4r/man/acm.file.exists.Rd
acm4r/man/call_bablbs.Rd
acm4r/man/call_acm.Rd
acm4r/man/acm.file.checkdelete.Rd
acm4r/man/experiments.in.Rd
acm4r/man/call_erra.Rd
acm4r/man/clusters.Rd
acm4r/man/acmwrapall.Rd
acm4r/man/call_gd2.Rd
acm4r/man/call_gd1.Rd