acm4r: Align-and-Count Method comparisons of RFLP data
Version 1.0

Fragment lengths or molecular weights from pairs of lanes are compared, and a number of matching bands are calculated using the Align-and-Count Method.

AuthorAndrea Benedetti, Sahir Rai Bhatnagar, Xiaofei Zhao
Date of publication2013-12-28 06:59:21
MaintainerAndrea Benedetti <andrea.benedetti@mcgill.ca>
LicenseGPL
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("acm4r")

Popular man pages

acmwrapall: acmwrapall (acm warp all)
call_acm: Align-and-Count Method comparisons of RFLP data
call_bablbs: BABLBS (Band Added Band Lost Band Substituted)
call_gd1: Genetic Distance 1
call_gd2: Genetic Distance 2
experiments.in: Sample fingerprint file
replicates.in: Sample replicate file
See all...

All man pages Function index File listing

Man pages

acm.file.checkdelete: acm.file.checkdelete
acm.file.copy: acm.file.copy (the modified file.copy function in acm)
acm.file.exists: acm.file.exists (the modified file.exists function in acm)
acmwrapall: acmwrapall (acm warp all)
call_acm: Align-and-Count Method comparisons of RFLP data
call_bablbs: BABLBS (Band Added Band Lost Band Substituted)
call_erra: Error Analysis for 1D Electrophoresis Gels
call_gd1: Genetic Distance 1
call_gd2: Genetic Distance 2
clusters: Clustering
experiments.in: Sample fingerprint file
replicates.in: Sample replicate file

Functions

acm Source code
acm.file.checkdelete Man page Source code
acm.file.copy Man page Source code
acm.file.exists Man page Source code
acmwrapall Man page Source code
align Source code
call_acm Man page Source code
call_bablbs Man page Source code
call_erra Man page Source code
call_gd1 Man page Source code
call_gd2 Man page Source code
clusters Man page Source code
erra Source code
experiments.in Man page
fprintf Source code Source code Source code
rawgd1 Source code
rawgd2 Source code
read_pars Source code
replicates.in Man page
score_samediff Source code
showpar_samediff Source code
slidefun_samediff Source code
version Source code

Files

NAMESPACE
data
data/experiments.in.txt.gz
data/replicates.in.txt.gz
R
R/call_erra.R
R/clusters.R
R/acmwrapall.R
R/call_gd2.R
R/acm.file.R
R/call_gd1.R
R/replicates.in.r
R/experiments.in.r
R/call_bablbs.R
R/acm.R
MD5
DESCRIPTION
man
man/replicates.in.Rd
man/acm.file.copy.Rd
man/acm.file.exists.Rd
man/call_bablbs.Rd
man/call_acm.Rd
man/acm.file.checkdelete.Rd
man/experiments.in.Rd
man/call_erra.Rd
man/clusters.Rd
man/acmwrapall.Rd
man/call_gd2.Rd
man/call_gd1.Rd
acm4r documentation built on May 19, 2017, 7:38 a.m.

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