BABLBS clustering means that two fingerprints match if they differ only through a lost band, a gained band, or a substituted band
call_bablbs(intable, minmatch = 2)
is the name of the acm table.
is the threshold of band number such that two lanes are matching if and only if the number of matching bands between them is more than minmatch.
a matrix of 2 columns where each row represents a pair of matching lanes.
call_bablbs doesn't work for minmatch<5
Pass the result of this function to and pass this result to
clusters to synthesize the results
Andrea Benedetti [email protected]
Sahir Rai Bhatnagar
Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
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#bablbs, GD1, and GD2 all work with the results from call_acm #now check matching by bablbs res_bab<-call_bablbs(res1)
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