Genetic Distance 2 which includes a lambda parameter
call_gd2(intable, gcrit = 2)
is the name of the acm table
is the threshold of genetic distance such that two lanes are matching if and only if the genetic distance between them is less than gcrit. Is used to get a list of ids for subjects who have gd distance less than gcrit
A matrix with two colums of fingerprint IDs. Each line
represents a match according to
call_gd2 doesn't work for lambda=0
Pass the result of this function to and pass this result to
clusters to synthesize the results
Andrea Benedetti [email protected]
Sahir Rai Bhatnagar
Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
call_acm for example of use
#matching by GD2 res_gd2<-call_gd2(res1)
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