call_gd2: Genetic Distance 2
In acm4r: Align-and-Count Method comparisons of RFLP data
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Examples
Description
Genetic Distance 2 which includes a lambda parameter
Usage
1
call_gd2(intable, gcrit = 2)
Arguments
intable
is the name of the acm table
gcrit
is the threshold of genetic distance such
that two lanes are matching if and only if the genetic
distance between them is less than gcrit. Is used to get
a list of ids for subjects who have gd distance less than
gcrit
Value
A matrix with two colums of fingerprint IDs. Each line
represents a match according to gcrit.
Note
call_gd2 doesn't work for lambda=0
Pass the result of this function to and pass this result to
clusters to synthesize the results
Author(s)
Andrea Benedetti andrea.benedetti@mcgill.ca
Sahir Rai Bhatnagar
XiaoFei Zhao
References
Salamon et. al (1998) Accommodating Error Analysis in
Comparison and Clustering of Molecular Fingerprints.
Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
See Also
call_acm for example of use
Examples
1
2
#matching by GD2
res_gd2<-call_gd2(res1)
acm4r documentation built on May 1, 2019, 7:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Note Author(s) References See Also Examples
Description
Genetic Distance 2 which includes a lambda parameter
Usage
1 | call_gd2(intable, gcrit = 2)
|
Arguments
intable |
is the name of the acm table |
gcrit |
is the threshold of genetic distance such that two lanes are matching if and only if the genetic distance between them is less than gcrit. Is used to get a list of ids for subjects who have gd distance less than gcrit |
Value
A matrix with two colums of fingerprint IDs. Each line
represents a match according to gcrit.
Note
call_gd2 doesn't work for lambda=0
Pass the result of this function to and pass this result to
clusters to synthesize the results
Author(s)
Andrea Benedetti andrea.benedetti@mcgill.ca
Sahir Rai Bhatnagar
XiaoFei Zhao
References
Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
See Also
call_acm for example of use
Examples
1 2 | #matching by GD2
res_gd2<-call_gd2(res1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.