| adaprApp | Launches Main app |
| adaprDependencies | Returns character string of adapr R package import... |
| adaprHomeDir | Identify adapr Home directory. Location of options file and... |
| adaprInstall | Install adapr in a library adaprInstall.R |
| adapr-package | Implementation of an Accountable Data Analysis Process |
| adaprSheet | Browse adapr cheat sheet |
| adaprUpdate | Updates latest adapr from gitHub. |
| addPackage | Add R package to a project |
| AppLoadFlex | Loads a single R object from file for a R Shiny app |
| arcRead | Loads R object from archivist repository within the results... |
| arcWrite | Saves R object to archivist repository in results directory... |
| browsePubFiles | Browses publication table for editing |
| checkAdaprHashAlgo | Checks or changes the specified adapr hash algorithm... |
| checkFileHash | Checks the consistency of the dependency directory with the... |
| checkFileHashSource | Checks the consistency of the dependency directory with the... |
| checkFileMtimeSource | Checks the consistency of the dependency directory with the... |
| checkRmdMode | Checks whether interactive R markdown session is ON |
| checkVersion | Check install of package of specific version |
| commit2char | git2r commit class to character converter |
| commitProject | Git commit of project. |
| condenseFileInfo | Generate condensed information about files from dependency... |
| createFileInfo | Creates a list containing information about a file |
| createMarkdown | Creates an Rmarkdown file in specified directory |
| createProgramGraph | Make plot of project programs only Summarize all programs.... |
| create_source_file_dir | Create source file directories |
| dataDir | Returns project's data directory, allows relative... |
| defaultAdaprSetup | Set up adapr 1st time |
| dependency-class | Dependency class |
| Digest | Digest files from (digest package) |
| fileInfoProjects | List project file information disk space, modification... |
| finalize_dependency | Writes dependency data to file in "Dependency" directory |
| firstProject | Create first project |
| getAdaprOptions | Returns the primary hub file with project location and id... |
| getDepSubgraph | Produces subgraph of dependencies of R script |
| getFileInfo | Retrieve the file info for the file by name OR from the data... |
| getFileSysTime | Retrun time of file system |
| getLibrary | Get library for a project |
| get_orchard | Returns the primary hub file with project location and id... |
| getProject | Returns the adapr project in R option "adaprProject" |
| getProjectInfo | Acquire all dependencies related to a project, Generate graph... |
| getProjectInfoSI | Given source_info object, retrieves project information |
| getProjectLibrary | Given Project name, Return project library directory |
| getProjectPath | Given Project id, Return project directory |
| getProjectPublishPath | Given Project name, Return project publish directory |
| getProjectSwapPath | Retrieve project swap directory |
| getPubResults | Read result filepaths to publish |
| getSourceInfo | Returns the information related to the adapr script |
| getUpstream | Identifies dependencies in a DAG |
| gitAdd | git add to stage the file |
| gitCommit | git commit. Requires git installation. |
| gitConfigure | Configure user.name and email for git. |
| gitConfigureTest | Checks git configuration. Requires git installation |
| gitHistorySearch | Performes git history search |
| gitIgnoreLibrary | Git ignore the library file |
| gitInfo | Retrieves the information from git about a file |
| gitInit | Initiate git |
| git_path | Find path for git executable |
| gitProvenance | Identify git provenance of file within a project |
| Graph | Write object and capture file information |
| graphProject | Make plot of project programs only Summarize all programs.... |
| guess.read.fcn | Return function for reading common file types |
| guessWriteFcn | Return function for writing common file types |
| idPackages | Lower level function that captures packages that are... |
| idSync | Returns the source files needed to repair synchrony |
| importData | Import selected file into the project data directory |
| initialize_dependency_info | Initializes dependency object source_info |
| initProject | initialize project |
| install | Install package of specific version |
| installLibrary | Install package of specific version |
| installProjectPackages | Installs all packages |
| Library | Installs and loads library specific to a project |
| listBranches | Lists the branches available for loading in the adapr project |
| listDatafiles | Lists the data files available for reading in the adapr... |
| listProjects | List projects |
| listScripts | Lists the R scripts in the adapr project |
| loadAdaprTest | Create adaprTest example project |
| Load.branch | Loads a single R object from file |
| loadFlex | Loads a single R object from file, more flexible than... |
| loadInstallLibraryFile | This function is no longer supported. Loads libraries within... |
| makeDependencyGraphObj | Creates an graph object from a dependency object |
| makeFunction | Generates the shell of a R function that is project specific... |
| makeHyperlink | Makes HTML hyper link |
| makeScript | Generates the shell of a code that is project specific |
| makeSummaryGraph | Make.summary graph of projects based on files in dependency... |
| monitorParallelSync | Experimental (use with caution) track parallelSync while in... |
| openProjectList | Browses orchard in file system |
| openScript | Opens script from a project with default R program. Can open... |
| parallelSync | Experimental (use with caution) parallel syncrhonization of... |
| path.expand.2 | Location of options file and project listing. Swap / for \ in... |
| plantOrchard | Create project hub files in root directory |
| plantTree | initialize project |
| programIOTable | Create program io table |
| project.directory.tree | Project directory tree structure contains the relative... |
| projectReportMarkdown | Make plot of network within html documents. Summarize all... |
| projectReportSend | Make plot of network within html documents. Summarize all... |
| publishResults | Read in results to publish & Copies results to the project's... |
| pullSourceInfo | Create source_info from project.id |
| rapidPlot | Make project graph with sync status already computed. |
| Read | Read data and capture the file information within dependency... |
| Read.cap | Lower level function that reads data and capture the file... |
| read.dependency | Lower level function that reads the script dependcy data from... |
| readDependency | Collect trees from dependency directory |
| readLibrary | Read library file |
| ReadTrack | Tracks files that read by functions not in adapr and captures... |
| redirectTree | Lower level function that that changes project... |
| relocateProject | changes project directory/publish directory/library locataion... |
| removePackage | Remove R package to a project |
| removeProject | Removes project from orchard, but doesn't delete project from... |
| removeScript | Remove an R script from a project. Removes program,... |
| renderRmd | Renders and Rmarkdown file |
| reportProject | Make plot of network within html documents. Summarize all... |
| resultsDir | Returns project's results directory, allows relative... |
| reworkProjectPath | Lower level function that collects all trees in... |
| runScript | Run an R script within a project using devtools::clean_source |
| runSourceDirectory | Runs all source files within the directory source.directory |
| scriptLoader | Initializes dependency object source_info |
| scriptSubgraph | Produces script only subgraph |
| searchScripts | Searches R scripts and R markdown files within a project. |
| sendBranch | Copy dependent programs to swap directory |
| sendBranchSI | Copy dependent programs to swap directory |
| setAdaprOptions | Returns Modifies the primary adapr option file |
| setProject | Checks or changes the specified adapr project in R option... |
| showProject | Opens project directory |
| showResults | Opens results directory of project or R script within a... |
| sourceSyncSI | Lower level function that synchronizes project by running... |
| sourceSyncSILoad | Synchronize project by IDENTIFYING necessary R scripts |
| sproutProgram | Lower level function that generates the shell of a code that... |
| swapProjectPath | Lower level function that takes list of dependency file data... |
| syncProject | Checks the synchronization project and runs scripts needed... |
| syncTest | Lower level function that checks the synchrony of source... |
| syncTestPI | Lower level function that tests the synchrony of files in... |
| syncTestProject | Tests the synchrony of files in dependency tree |
| syncTestSI | Tests the synchrony of files in dependency tree |
| syncTrunk | Partial project synchronization of dependencies to an... |
| updateAdaprConfig | Updates the project list file to include project specific... |
| Write | Write object and capture file information |
| Write.cap | Lower level function that writes data and captures the file... |
| write.dependency | Lower level function that writes the dependency object to... |
| WriteTrack | Tracks files written by functions not in adapr and captures... |
