Writes dependency data to file in "Dependency" directory
Logical denoting whether the finalizing occurs in markdown vs R script
Logical indicated to write the dependency object
Operates git tracking of program and dependency file.
Strips project directory out of dependency file. Passes workspace to R markdown file and render. Stores file modification and hash for all dependencies. Writes dependency information to ‘Dependency’ directory. Adds dependency file and Session information to Git.
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## Not run: #Executed only at the end of adapr R script #finalize_dependency() ## End(Not run)
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