adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.

AuthorStéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Date of publication2016-12-13 19:53:07
MaintainerAurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
LicenseGPL (>= 2)
Version1.0-6
http://pbil.univ-lyon1.fr/ADE-4
Mailing list: http://listes.univ-lyon1.fr/wws/info/adelist

View on CRAN

Man pages

add.ADEg: Superpose an new 'ADEg' graph to the previous ones plotted

addhist: Adds histograms and density lines against a bi-dimensional...

addtext: Adds labels on graphics.

ADEg.C1-class: Class 'ADEg.C1'

ADEg-class: Class 'ADEg'

adeg.panel.hist: Panel function for adding histograms.

adeg.panel.join: Panel function for joining lines.

adeg.panel.label: Panel function for adding labels.

adeg.panel.nb: Panel functions for adding graphs.

adeg.panel.Spatial: Panel function for adding spatial objects.

adeg.panel.values: Panel function drawing a third variable into a...

adegpar: Handling ADEg graphical parameters

adegraphics-internal: For internal use only

adegraphics-package: Graphical objects for ade4 functions (and more)

ADEgS: Creation of 'ADEgS' objects

ADEg.S1-class: Class 'ADEg.S1'

ADEg.S2-class: Class 'ADEg.S2'

ADEgS-class: Class '"ADEgS"'

ADEg.T-class: Class 'ADEg.T'

ADEg.Tr-class: Class '"ADEg.Tr"'

C1.barchart-class: Class 'C1.barchart'

C1.curve-class: Class 'C1.curve'

C1.density-class: Class 'C1.density'

C1.dotplot-class: Class 'C1.dotplot'

C1.gauss-class: Class 'C1.gauss'

C1.hist-class: Class 'C1.hist'

C1.interval-class: Class 'C1.interval'

cbindADEg: Combine 'ADEg' objects by columns or rows

changelatticetheme: Change the 'lattice' theme used for 'adegraphics'

getcall-methods: Method for 'ADEg' and 'ADEgS' objects

insert: Insert a graphic into an existing one

layout2position: Transform a layout matrix into a position one

panel-methods: Methods 'panel' for 'ADEg' objects

plot: Methods to display the outputs of an analysis performed with...

plotEig: Plot a barchart of eigen values

prepare-methods: Methods 'prepare' for 'ADEg' objects

S1.boxplot-class: Class 'S1.boxplot'

S1.class-class: Class 'S1.class'

s1d.barchart: 1-D plot of a numeric score by bars

s1d.boxplot: 1-D box plot of a numeric score partitioned in classes...

s1d.class: 1-D plot of a numeric score partitioned in classes (levels of...

s1d.curve: 1-D plot of a numeric score linked by curves

s1d.curves: 1-D plot of multiple scores linked by curves

s1d.density: 1-D plot of a numeric score by density curves

s1d.distri: 1-D plot of a numeric score by means/standard deviations...

s1d.dotplot: 1-D plot of a numeric score by dots

s1d.gauss: 1-D plot of a numeric score by Gaussian curves

s1d.hist: 1-D plot of a numeric score by bars

s1d.interval: 1-D plot of the interval between two numeric scores

S1.distri-class: Class 'S1.distri'

s1d.label: 1-D plot of a numeric score with labels

s1d.match: 1-D plot of the matching between two numeric scores

S1.label-class: Class 'S1.label'

S1.match-class: Class 'S1.match'

S2.arrow-class: Class 'S2.arrow'

S2.class-class: Class 'S2.class'

S2.corcircle-class: Class 'S2.corcircle'

S2.density-class: Class 'S2.density'

S2.distri-class: Class 'S2.distri'

S2.image-class: Class 'S2.image'

S2.label-class: Class 'S2.label'

S2.logo-class: Class 'S2.logo'

S2.match-class: Class 'S2.match'

S2.traject-class: Class 'S2.traject'

S2.value-class: Class 'S2.value'

s.arrow: 2-D scatter plot with arrows

s.class: 2-D scatter plot with a partition in classes (levels of a...

s.corcircle: Correlation circle

s.density: 2-D scatter plot with kernel density estimation

s.distri: 2-D scatter plot with means/standard deviations computed...

setlimits1D: Computes limits for 1D and 2D displays.

s.image: 2-D scatter plot with loess estimation of an additional...

s.label: 2-D scatter plot with labels

s.logo: 2-D scatter plot with logos (bitmap objects)

s.match: 2-D scatter plot of the matching between two sets of...

sortparamADEg: Sort a sequence of graphical parameters

s.Spatial: Mapping of a Spatial* object

s.traject: 2-D scatter plot with trajectories

superpose: Superpose two graphics

s.value: 2-D scatter plot with proportional symbols (bubble plot)

table.image: Heat map-like representation with colored cells

table.value: Heat map-like representation with proportional symbols

T.cont-class: Class 'T.cont'

T.image-class: Class 'T.image'

Tr.class-class: Class 'Tr.class'

triangle.class: Ternary plot with a partition in classes (levels of a factor)

triangle.label: Ternary plot with labels

triangle.match: Ternary plot of the matching between two sets of coordinates

triangle.traject: Ternary plot with trajectories

Tr.label-class: Class 'Tr.label'

Tr.match-class: Class 'Tr.match'

Tr.traject-class: Class 'Tr.traject'

T.value-class: Class 'T.value'

zoom: Zoom in or out

Files in this package

adegraphics
adegraphics/inst
adegraphics/inst/doc
adegraphics/inst/doc/adegraphics.Rmd
adegraphics/inst/doc/adegraphics.html
adegraphics/inst/doc/adegraphics.R
adegraphics/tests
adegraphics/tests/sdistri.R
adegraphics/tests/sclass.R
adegraphics/tests/tvalue.R
adegraphics/tests/tdist.R
adegraphics/tests/shist.R
adegraphics/tests/smatch.R
adegraphics/tests/panelSpatial.R
adegraphics/tests/s1d.distri.R
adegraphics/tests/s1d.match.R
adegraphics/tests/simage.R
adegraphics/tests/s1d.gauss.R
adegraphics/tests/s1d.density.R
adegraphics/tests/s1d.boxplot.R
adegraphics/tests/svalue.R
adegraphics/tests/timage.R
adegraphics/tests/slogo.R
adegraphics/tests/nbgraph.R
adegraphics/tests/sarrow.R
adegraphics/tests/scorcircle.R
adegraphics/tests/straject.R
adegraphics/tests/sdensity.R
adegraphics/tests/scatter.R
adegraphics/tests/s1dclass.R
adegraphics/tests/triangle.R
adegraphics/tests/add.R
adegraphics/tests/slabel.R
adegraphics/tests/adegraphics.R
adegraphics/tests/parameter.R
adegraphics/tests/s1d.label.R
adegraphics/NAMESPACE
adegraphics/R
adegraphics/R/S2.image.R adegraphics/R/utilsclass.R adegraphics/R/Tr.class.R adegraphics/R/S2.distri.R adegraphics/R/S1.boxplot.R adegraphics/R/genericMethod.R adegraphics/R/T.cont.R adegraphics/R/C1.interval.R adegraphics/R/utils.R adegraphics/R/S2.corcircle.R adegraphics/R/S2.density.R adegraphics/R/S2.match.R adegraphics/R/Tr.traject.R adegraphics/R/adeGsenv.R adegraphics/R/utilskey.R adegraphics/R/ade4-plot.R adegraphics/R/ADEg.T.R adegraphics/R/Tr.label.R adegraphics/R/ADEg.S1.R adegraphics/R/C1.curve.R adegraphics/R/T.image.R adegraphics/R/S1.label.R adegraphics/R/S1.match.R adegraphics/R/ade4-kplot.R adegraphics/R/C1.barchart.R adegraphics/R/ADEgS.R adegraphics/R/C1.dotplot.R adegraphics/R/utilstriangle.R adegraphics/R/utilsADEgS.R adegraphics/R/C1.hist.R adegraphics/R/ADEg.C1.R adegraphics/R/C1.density.R adegraphics/R/S2.value.R adegraphics/R/C1.gauss.R adegraphics/R/S1.class.R adegraphics/R/Tr.match.R adegraphics/R/S2.arrow.R adegraphics/R/multiplot.R adegraphics/R/C1.curves.R adegraphics/R/S2.label.R adegraphics/R/S2.class.R adegraphics/R/panelfunctions.R adegraphics/R/ade4-scatter.R adegraphics/R/S2.logo.R adegraphics/R/S2.traject.R adegraphics/R/T.value.R adegraphics/R/S1.distri.R adegraphics/R/s.Spatial.R adegraphics/R/ADEg.S2.R adegraphics/R/addtext.R adegraphics/R/ADEg.R adegraphics/R/ADEg.Tr.R adegraphics/R/parameter.R
adegraphics/vignettes
adegraphics/vignettes/adegraphics.Rmd
adegraphics/vignettes/paramVSparam.R
adegraphics/vignettes/classes.png
adegraphics/vignettes/adegraphics.bib
adegraphics/vignettes/tableparamVSfunction.csv
adegraphics/vignettes/paramVSfunction.R
adegraphics/vignettes/gargsVSclass.R
adegraphics/vignettes/gargsVSclass.csv
adegraphics/MD5
adegraphics/build
adegraphics/build/vignette.rds
adegraphics/DESCRIPTION
adegraphics/man
adegraphics/man/S2.distri-class.Rd adegraphics/man/S2.value-class.Rd adegraphics/man/cbindADEg.Rd adegraphics/man/sortparamADEg.Rd adegraphics/man/table.image.Rd adegraphics/man/s.value.Rd adegraphics/man/T.cont-class.Rd adegraphics/man/s.logo.Rd adegraphics/man/S2.traject-class.Rd adegraphics/man/ADEgS-class.Rd adegraphics/man/triangle.match.Rd adegraphics/man/changelatticetheme.Rd adegraphics/man/ADEg.C1-class.Rd adegraphics/man/Tr.match-class.Rd adegraphics/man/S2.class-class.Rd adegraphics/man/s.traject.Rd adegraphics/man/setlimits1D.Rd adegraphics/man/prepare-methods.Rd adegraphics/man/s.match.Rd adegraphics/man/panel-methods.Rd adegraphics/man/s1d.curves.Rd adegraphics/man/s1d.class.Rd adegraphics/man/T.value-class.Rd adegraphics/man/triangle.traject.Rd adegraphics/man/s.arrow.Rd adegraphics/man/C1.barchart-class.Rd adegraphics/man/S2.corcircle-class.Rd adegraphics/man/s1d.density.Rd adegraphics/man/s1d.hist.Rd adegraphics/man/s1d.barchart.Rd adegraphics/man/s.label.Rd adegraphics/man/s.Spatial.Rd adegraphics/man/ADEg.T-class.Rd adegraphics/man/adeg.panel.values.Rd adegraphics/man/C1.interval-class.Rd adegraphics/man/ADEg-class.Rd adegraphics/man/s1d.curve.Rd adegraphics/man/adegpar.Rd adegraphics/man/S2.density-class.Rd adegraphics/man/S2.image-class.Rd adegraphics/man/s.image.Rd adegraphics/man/ADEg.S2-class.Rd adegraphics/man/C1.curve-class.Rd adegraphics/man/triangle.label.Rd adegraphics/man/adegraphics-internal.Rd adegraphics/man/S1.boxplot-class.Rd adegraphics/man/S2.label-class.Rd adegraphics/man/s.class.Rd adegraphics/man/plotEig.Rd adegraphics/man/S1.match-class.Rd adegraphics/man/adeg.panel.label.Rd adegraphics/man/C1.gauss-class.Rd adegraphics/man/adeg.panel.join.Rd adegraphics/man/s1d.distri.Rd adegraphics/man/ADEgS.Rd adegraphics/man/s1d.dotplot.Rd adegraphics/man/zoom.Rd adegraphics/man/insert.Rd adegraphics/man/Tr.label-class.Rd adegraphics/man/add.ADEg.Rd adegraphics/man/S1.class-class.Rd adegraphics/man/s.corcircle.Rd adegraphics/man/T.image-class.Rd adegraphics/man/s1d.interval.Rd adegraphics/man/s.density.Rd adegraphics/man/s1d.boxplot.Rd adegraphics/man/triangle.class.Rd adegraphics/man/adeg.panel.hist.Rd adegraphics/man/C1.hist-class.Rd adegraphics/man/s1d.match.Rd adegraphics/man/getcall-methods.Rd adegraphics/man/S2.arrow-class.Rd adegraphics/man/Tr.traject-class.Rd adegraphics/man/S1.label-class.Rd adegraphics/man/table.value.Rd adegraphics/man/C1.density-class.Rd adegraphics/man/s1d.label.Rd adegraphics/man/ADEg.Tr-class.Rd adegraphics/man/adeg.panel.Spatial.Rd adegraphics/man/S2.logo-class.Rd adegraphics/man/Tr.class-class.Rd adegraphics/man/addtext.Rd adegraphics/man/adeg.panel.nb.Rd adegraphics/man/s.distri.Rd adegraphics/man/s1d.gauss.Rd adegraphics/man/plot.Rd adegraphics/man/addhist.Rd adegraphics/man/ADEg.S1-class.Rd adegraphics/man/S2.match-class.Rd adegraphics/man/superpose.Rd adegraphics/man/adegraphics-package.Rd adegraphics/man/layout2position.Rd adegraphics/man/C1.dotplot-class.Rd adegraphics/man/S1.distri-class.Rd

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