Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.

Author | Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière. |

Date of publication | 2016-12-13 19:53:07 |

Maintainer | Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr> |

License | GPL (>= 2) |

Version | 1.0-6 |

http://pbil.univ-lyon1.fr/ADE-4 | |

Mailing list: http://listes.univ-lyon1.fr/wws/info/adelist |

**add.ADEg:** Superpose an new 'ADEg' graph to the previous ones plotted

**addhist:** Adds histograms and density lines against a bi-dimensional...

**addtext:** Adds labels on graphics.

**ADEg.C1-class:** Class 'ADEg.C1'

**ADEg-class:** Class 'ADEg'

**adeg.panel.hist:** Panel function for adding histograms.

**adeg.panel.join:** Panel function for joining lines.

**adeg.panel.label:** Panel function for adding labels.

**adeg.panel.nb:** Panel functions for adding graphs.

**adeg.panel.Spatial:** Panel function for adding spatial objects.

**adeg.panel.values:** Panel function drawing a third variable into a...

**adegpar:** Handling ADEg graphical parameters

**adegraphics-internal:** For internal use only

**adegraphics-package:** Graphical objects for ade4 functions (and more)

**ADEgS:** Creation of 'ADEgS' objects

**ADEg.S1-class:** Class 'ADEg.S1'

**ADEg.S2-class:** Class 'ADEg.S2'

**ADEgS-class:** Class '"ADEgS"'

**ADEg.T-class:** Class 'ADEg.T'

**ADEg.Tr-class:** Class '"ADEg.Tr"'

**C1.barchart-class:** Class 'C1.barchart'

**C1.curve-class:** Class 'C1.curve'

**C1.density-class:** Class 'C1.density'

**C1.dotplot-class:** Class 'C1.dotplot'

**C1.gauss-class:** Class 'C1.gauss'

**C1.hist-class:** Class 'C1.hist'

**C1.interval-class:** Class 'C1.interval'

**cbindADEg:** Combine 'ADEg' objects by columns or rows

**changelatticetheme:** Change the 'lattice' theme used for 'adegraphics'

**getcall-methods:** Method for 'ADEg' and 'ADEgS' objects

**insert:** Insert a graphic into an existing one

**layout2position:** Transform a layout matrix into a position one

**panel-methods:** Methods 'panel' for 'ADEg' objects

**plot:** Methods to display the outputs of an analysis performed with...

**plotEig:** Plot a barchart of eigen values

**prepare-methods:** Methods 'prepare' for 'ADEg' objects

**S1.boxplot-class:** Class 'S1.boxplot'

**S1.class-class:** Class 'S1.class'

**s1d.barchart:** 1-D plot of a numeric score by bars

**s1d.boxplot:** 1-D box plot of a numeric score partitioned in classes...

**s1d.class:** 1-D plot of a numeric score partitioned in classes (levels of...

**s1d.curve:** 1-D plot of a numeric score linked by curves

**s1d.curves:** 1-D plot of multiple scores linked by curves

**s1d.density:** 1-D plot of a numeric score by density curves

**s1d.distri:** 1-D plot of a numeric score by means/standard deviations...

**s1d.dotplot:** 1-D plot of a numeric score by dots

**s1d.gauss:** 1-D plot of a numeric score by Gaussian curves

**s1d.hist:** 1-D plot of a numeric score by bars

**s1d.interval:** 1-D plot of the interval between two numeric scores

**S1.distri-class:** Class 'S1.distri'

**s1d.label:** 1-D plot of a numeric score with labels

**s1d.match:** 1-D plot of the matching between two numeric scores

**S1.label-class:** Class 'S1.label'

**S1.match-class:** Class 'S1.match'

**S2.arrow-class:** Class 'S2.arrow'

**S2.class-class:** Class 'S2.class'

**S2.corcircle-class:** Class 'S2.corcircle'

**S2.density-class:** Class 'S2.density'

**S2.distri-class:** Class 'S2.distri'

**S2.image-class:** Class 'S2.image'

**S2.label-class:** Class 'S2.label'

**S2.logo-class:** Class 'S2.logo'

**S2.match-class:** Class 'S2.match'

**S2.traject-class:** Class 'S2.traject'

**S2.value-class:** Class 'S2.value'

**s.arrow:** 2-D scatter plot with arrows

**s.class:** 2-D scatter plot with a partition in classes (levels of a...

**s.corcircle:** Correlation circle

**s.density:** 2-D scatter plot with kernel density estimation

**s.distri:** 2-D scatter plot with means/standard deviations computed...

**setlimits1D:** Computes limits for 1D and 2D displays.

**s.image:** 2-D scatter plot with loess estimation of an additional...

**s.label:** 2-D scatter plot with labels

**s.logo:** 2-D scatter plot with logos (bitmap objects)

**s.match:** 2-D scatter plot of the matching between two sets of...

**sortparamADEg:** Sort a sequence of graphical parameters

**s.Spatial:** Mapping of a Spatial* object

**s.traject:** 2-D scatter plot with trajectories

**superpose:** Superpose two graphics

**s.value:** 2-D scatter plot with proportional symbols (bubble plot)

**table.image:** Heat map-like representation with colored cells

**table.value:** Heat map-like representation with proportional symbols

**T.cont-class:** Class 'T.cont'

**T.image-class:** Class 'T.image'

**Tr.class-class:** Class 'Tr.class'

**triangle.class:** Ternary plot with a partition in classes (levels of a factor)

**triangle.label:** Ternary plot with labels

**triangle.match:** Ternary plot of the matching between two sets of coordinates

**triangle.traject:** Ternary plot with trajectories

**Tr.label-class:** Class 'Tr.label'

**Tr.match-class:** Class 'Tr.match'

**Tr.traject-class:** Class 'Tr.traject'

**T.value-class:** Class 'T.value'

**zoom:** Zoom in or out

adegraphics

adegraphics/inst

adegraphics/inst/doc

adegraphics/inst/doc/adegraphics.Rmd

adegraphics/inst/doc/adegraphics.html

adegraphics/inst/doc/adegraphics.R

adegraphics/tests

adegraphics/tests/sdistri.R

adegraphics/tests/sclass.R

adegraphics/tests/tvalue.R

adegraphics/tests/tdist.R

adegraphics/tests/shist.R

adegraphics/tests/smatch.R

adegraphics/tests/panelSpatial.R

adegraphics/tests/s1d.distri.R

adegraphics/tests/s1d.match.R

adegraphics/tests/simage.R

adegraphics/tests/s1d.gauss.R

adegraphics/tests/s1d.density.R

adegraphics/tests/s1d.boxplot.R

adegraphics/tests/svalue.R

adegraphics/tests/timage.R

adegraphics/tests/slogo.R

adegraphics/tests/nbgraph.R

adegraphics/tests/sarrow.R

adegraphics/tests/scorcircle.R

adegraphics/tests/straject.R

adegraphics/tests/sdensity.R

adegraphics/tests/scatter.R

adegraphics/tests/s1dclass.R

adegraphics/tests/triangle.R

adegraphics/tests/add.R

adegraphics/tests/slabel.R

adegraphics/tests/adegraphics.R

adegraphics/tests/parameter.R

adegraphics/tests/s1d.label.R

adegraphics/NAMESPACE

adegraphics/R

adegraphics/R/S2.image.R
adegraphics/R/utilsclass.R
adegraphics/R/Tr.class.R
adegraphics/R/S2.distri.R
adegraphics/R/S1.boxplot.R
adegraphics/R/genericMethod.R
adegraphics/R/T.cont.R
adegraphics/R/C1.interval.R
adegraphics/R/utils.R
adegraphics/R/S2.corcircle.R
adegraphics/R/S2.density.R
adegraphics/R/S2.match.R
adegraphics/R/Tr.traject.R
adegraphics/R/adeGsenv.R
adegraphics/R/utilskey.R
adegraphics/R/ade4-plot.R
adegraphics/R/ADEg.T.R
adegraphics/R/Tr.label.R
adegraphics/R/ADEg.S1.R
adegraphics/R/C1.curve.R
adegraphics/R/T.image.R
adegraphics/R/S1.label.R
adegraphics/R/S1.match.R
adegraphics/R/ade4-kplot.R
adegraphics/R/C1.barchart.R
adegraphics/R/ADEgS.R
adegraphics/R/C1.dotplot.R
adegraphics/R/utilstriangle.R
adegraphics/R/utilsADEgS.R
adegraphics/R/C1.hist.R
adegraphics/R/ADEg.C1.R
adegraphics/R/C1.density.R
adegraphics/R/S2.value.R
adegraphics/R/C1.gauss.R
adegraphics/R/S1.class.R
adegraphics/R/Tr.match.R
adegraphics/R/S2.arrow.R
adegraphics/R/multiplot.R
adegraphics/R/C1.curves.R
adegraphics/R/S2.label.R
adegraphics/R/S2.class.R
adegraphics/R/panelfunctions.R
adegraphics/R/ade4-scatter.R
adegraphics/R/S2.logo.R
adegraphics/R/S2.traject.R
adegraphics/R/T.value.R
adegraphics/R/S1.distri.R
adegraphics/R/s.Spatial.R
adegraphics/R/ADEg.S2.R
adegraphics/R/addtext.R
adegraphics/R/ADEg.R
adegraphics/R/ADEg.Tr.R
adegraphics/R/parameter.R
adegraphics/vignettes

adegraphics/vignettes/adegraphics.Rmd

adegraphics/vignettes/paramVSparam.R

adegraphics/vignettes/classes.png

adegraphics/vignettes/adegraphics.bib

adegraphics/vignettes/tableparamVSfunction.csv

adegraphics/vignettes/paramVSfunction.R

adegraphics/vignettes/gargsVSclass.R

adegraphics/vignettes/gargsVSclass.csv

adegraphics/MD5

adegraphics/build

adegraphics/build/vignette.rds

adegraphics/DESCRIPTION

adegraphics/man

adegraphics/man/S2.distri-class.Rd
adegraphics/man/S2.value-class.Rd
adegraphics/man/cbindADEg.Rd
adegraphics/man/sortparamADEg.Rd
adegraphics/man/table.image.Rd
adegraphics/man/s.value.Rd
adegraphics/man/T.cont-class.Rd
adegraphics/man/s.logo.Rd
adegraphics/man/S2.traject-class.Rd
adegraphics/man/ADEgS-class.Rd
adegraphics/man/triangle.match.Rd
adegraphics/man/changelatticetheme.Rd
adegraphics/man/ADEg.C1-class.Rd
adegraphics/man/Tr.match-class.Rd
adegraphics/man/S2.class-class.Rd
adegraphics/man/s.traject.Rd
adegraphics/man/setlimits1D.Rd
adegraphics/man/prepare-methods.Rd
adegraphics/man/s.match.Rd
adegraphics/man/panel-methods.Rd
adegraphics/man/s1d.curves.Rd
adegraphics/man/s1d.class.Rd
adegraphics/man/T.value-class.Rd
adegraphics/man/triangle.traject.Rd
adegraphics/man/s.arrow.Rd
adegraphics/man/C1.barchart-class.Rd
adegraphics/man/S2.corcircle-class.Rd
adegraphics/man/s1d.density.Rd
adegraphics/man/s1d.hist.Rd
adegraphics/man/s1d.barchart.Rd
adegraphics/man/s.label.Rd
adegraphics/man/s.Spatial.Rd
adegraphics/man/ADEg.T-class.Rd
adegraphics/man/adeg.panel.values.Rd
adegraphics/man/C1.interval-class.Rd
adegraphics/man/ADEg-class.Rd
adegraphics/man/s1d.curve.Rd
adegraphics/man/adegpar.Rd
adegraphics/man/S2.density-class.Rd
adegraphics/man/S2.image-class.Rd
adegraphics/man/s.image.Rd
adegraphics/man/ADEg.S2-class.Rd
adegraphics/man/C1.curve-class.Rd
adegraphics/man/triangle.label.Rd
adegraphics/man/adegraphics-internal.Rd
adegraphics/man/S1.boxplot-class.Rd
adegraphics/man/S2.label-class.Rd
adegraphics/man/s.class.Rd
adegraphics/man/plotEig.Rd
adegraphics/man/S1.match-class.Rd
adegraphics/man/adeg.panel.label.Rd
adegraphics/man/C1.gauss-class.Rd
adegraphics/man/adeg.panel.join.Rd
adegraphics/man/s1d.distri.Rd
adegraphics/man/ADEgS.Rd
adegraphics/man/s1d.dotplot.Rd
adegraphics/man/zoom.Rd
adegraphics/man/insert.Rd
adegraphics/man/Tr.label-class.Rd
adegraphics/man/add.ADEg.Rd
adegraphics/man/S1.class-class.Rd
adegraphics/man/s.corcircle.Rd
adegraphics/man/T.image-class.Rd
adegraphics/man/s1d.interval.Rd
adegraphics/man/s.density.Rd
adegraphics/man/s1d.boxplot.Rd
adegraphics/man/triangle.class.Rd
adegraphics/man/adeg.panel.hist.Rd
adegraphics/man/C1.hist-class.Rd
adegraphics/man/s1d.match.Rd
adegraphics/man/getcall-methods.Rd
adegraphics/man/S2.arrow-class.Rd
adegraphics/man/Tr.traject-class.Rd
adegraphics/man/S1.label-class.Rd
adegraphics/man/table.value.Rd
adegraphics/man/C1.density-class.Rd
adegraphics/man/s1d.label.Rd
adegraphics/man/ADEg.Tr-class.Rd
adegraphics/man/adeg.panel.Spatial.Rd
adegraphics/man/S2.logo-class.Rd
adegraphics/man/Tr.class-class.Rd
adegraphics/man/addtext.Rd
adegraphics/man/adeg.panel.nb.Rd
adegraphics/man/s.distri.Rd
adegraphics/man/s1d.gauss.Rd
adegraphics/man/plot.Rd
adegraphics/man/addhist.Rd
adegraphics/man/ADEg.S1-class.Rd
adegraphics/man/S2.match-class.Rd
adegraphics/man/superpose.Rd
adegraphics/man/adegraphics-package.Rd
adegraphics/man/layout2position.Rd
adegraphics/man/C1.dotplot-class.Rd
adegraphics/man/S1.distri-class.Rd
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