adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data
Version 1.0-8

Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.

AuthorStéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Date of publication2017-04-11 22:52:03 UTC
MaintainerAurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
LicenseGPL (>= 2)
Version1.0-8
URL http://pbil.univ-lyon1.fr/ADE-4 Mailing list: http://listes.univ-lyon1.fr/wws/info/adelist
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("adegraphics")

Getting started

Package overview
The `adegraphics` package

Popular man pages

adeg.panel.label: Panel function for adding labels.
adegraphics-package: Graphical objects for ade4 functions (and more)
ADEg.S1-class: Class 'ADEg.S1'
ADEg.S2-class: Class 'ADEg.S2'
s1d.label: 1-D plot of a numeric score with labels
s.image: 2-D scatter plot with loess estimation of an additional...
s.match: 2-D scatter plot of the matching between two sets of...
See all...

All man pages Function index File listing

Man pages

add.ADEg: Superpose an new 'ADEg' graph to the previous ones plotted
addhist: Adds histograms and density lines against a bi-dimensional...
addtext: Adds labels on graphics.
ADEg.C1-class: Class 'ADEg.C1'
ADEg-class: Class 'ADEg'
adeg.panel.hist: Panel function for adding histograms.
adeg.panel.join: Panel function for joining lines.
adeg.panel.label: Panel function for adding labels.
adeg.panel.nb: Panel functions for adding graphs.
adeg.panel.Spatial: Panel function for adding spatial objects.
adeg.panel.values: Panel function drawing a third variable into a...
adegpar: Handling ADEg graphical parameters
adegraphics-internal: For internal use only
adegraphics-package: Graphical objects for ade4 functions (and more)
ADEgS: Creation of 'ADEgS' objects
ADEg.S1-class: Class 'ADEg.S1'
ADEg.S2-class: Class 'ADEg.S2'
ADEgS-class: Class '"ADEgS"'
ADEg.T-class: Class 'ADEg.T'
ADEg.Tr-class: Class '"ADEg.Tr"'
C1.barchart-class: Class 'C1.barchart'
C1.curve-class: Class 'C1.curve'
C1.density-class: Class 'C1.density'
C1.dotplot-class: Class 'C1.dotplot'
C1.gauss-class: Class 'C1.gauss'
C1.hist-class: Class 'C1.hist'
C1.interval-class: Class 'C1.interval'
cbindADEg: Combine 'ADEg' objects by columns or rows
changelatticetheme: Change the 'lattice' theme used for 'adegraphics'
getcall-methods: Method for 'ADEg' and 'ADEgS' objects
insert: Insert a graphic into an existing one
layout2position: Transform a layout matrix into a position one
panel-methods: Methods 'panel' for 'ADEg' objects
plot: Methods to display the outputs of an analysis performed with...
plotEig: Plot a barchart of eigen values
prepare-methods: Methods 'prepare' for 'ADEg' objects
S1.boxplot-class: Class 'S1.boxplot'
S1.class-class: Class 'S1.class'
s1d.barchart: 1-D plot of a numeric score by bars
s1d.boxplot: 1-D box plot of a numeric score partitioned in classes...
s1d.class: 1-D plot of a numeric score partitioned in classes (levels of...
s1d.curve: 1-D plot of a numeric score linked by curves
s1d.curves: 1-D plot of multiple scores linked by curves
s1d.density: 1-D plot of a numeric score by density curves
s1d.distri: 1-D plot of a numeric score by means/standard deviations...
s1d.dotplot: 1-D plot of a numeric score by dots
s1d.gauss: 1-D plot of a numeric score by Gaussian curves
s1d.hist: 1-D plot of a numeric score by bars
s1d.interval: 1-D plot of the interval between two numeric scores
S1.distri-class: Class 'S1.distri'
s1d.label: 1-D plot of a numeric score with labels
s1d.match: 1-D plot of the matching between two numeric scores
S1.label-class: Class 'S1.label'
S1.match-class: Class 'S1.match'
S2.arrow-class: Class 'S2.arrow'
S2.class-class: Class 'S2.class'
S2.corcircle-class: Class 'S2.corcircle'
S2.density-class: Class 'S2.density'
S2.distri-class: Class 'S2.distri'
S2.image-class: Class 'S2.image'
S2.label-class: Class 'S2.label'
S2.logo-class: Class 'S2.logo'
S2.match-class: Class 'S2.match'
S2.traject-class: Class 'S2.traject'
S2.value-class: Class 'S2.value'
s.arrow: 2-D scatter plot with arrows
s.class: 2-D scatter plot with a partition in classes (levels of a...
s.corcircle: Correlation circle
s.density: 2-D scatter plot with kernel density estimation
s.distri: 2-D scatter plot with means/standard deviations computed...
setlimits1D: Computes limits for 1D and 2D displays.
s.image: 2-D scatter plot with loess estimation of an additional...
s.label: 2-D scatter plot with labels
s.logo: 2-D scatter plot with logos (bitmap objects)
s.match: 2-D scatter plot of the matching between two sets of...
sortparamADEg: Sort a sequence of graphical parameters
s.Spatial: Mapping of a Spatial* object
s.traject: 2-D scatter plot with trajectories
superpose: Superpose two graphics
s.value: 2-D scatter plot with proportional symbols (bubble plot)
table.image: Heat map-like representation with colored cells
table.value: Heat map-like representation with proportional symbols
T.cont-class: Class 'T.cont'
T.image-class: Class 'T.image'
Tr.class-class: Class 'Tr.class'
triangle.class: Ternary plot with a partition in classes (levels of a factor)
triangle.label: Ternary plot with labels
triangle.match: Ternary plot of the matching between two sets of coordinates
triangle.traject: Ternary plot with trajectories
Tr.label-class: Class 'Tr.label'
Tr.match-class: Class 'Tr.match'
Tr.traject-class: Class 'Tr.traject'
T.value-class: Class 'T.value'
zoom: Zoom in or out

Functions

$,ADEgS-method Man page
+,ADEg,ADEg-method Man page
+,ADEg,ADEgS-method Man page
+,ADEgS,ADEg-method Man page
+-methods Man page
ADEg Man page
ADEg-class Man page
ADEg.C1 Man page
ADEg.C1-class Man page
ADEg.S1 Man page
ADEg.S1-class Man page
ADEg.S2 Man page
ADEg.S2-class Man page
ADEg.T Man page
ADEg.T-class Man page
ADEg.Tr Man page
ADEg.Tr-class Man page
ADEgORADEgSORtrellis Man page
ADEgORADEgSORtrellis-class Man page
ADEgORtrellis Man page
ADEgORtrellis-class Man page
ADEgS Man page Source code
ADEgS-class Man page
C1.barchart Man page
C1.barchart-class Man page
C1.curve Man page
C1.curve-class Man page
C1.curves Man page
C1.curves-class Man page
C1.density Man page
C1.density-class Man page
C1.dotplot Man page
C1.dotplot-class Man page
C1.gauss Man page
C1.gauss-class Man page
C1.hist Man page
C1.hist-class Man page
C1.interval Man page
C1.interval-class Man page
S1.boxplot Man page
S1.boxplot-class Man page
S1.class Man page
S1.class-class Man page
S1.distri Man page
S1.distri-class Man page
S1.label Man page
S1.label-class Man page
S1.match Man page
S1.match-class Man page
S2.arrow Man page
S2.arrow-class Man page
S2.class Man page
S2.class-class Man page
S2.corcircle Man page
S2.corcircle-class Man page
S2.density Man page
S2.density-class Man page
S2.distri Man page
S2.distri-class Man page
S2.image Man page
S2.image-class Man page
S2.label Man page
S2.label-class Man page
S2.logo Man page
S2.logo-class Man page
S2.match Man page
S2.match-class Man page
S2.traject Man page
S2.traject-class Man page
S2.value Man page
S2.value-class Man page
T.cont Man page
T.cont-class Man page
T.image Man page
T.image-class Man page
T.value Man page
T.value-class Man page
Tr.class Man page
Tr.class-class Man page
Tr.label Man page
Tr.label-class Man page
Tr.match Man page
Tr.match-class Man page
Tr.traject Man page
Tr.traject-class Man page
[,ADEgS,numeric,missing,logical-method Man page
[,ADEgS,numeric,missing,missing-method Man page
[[,ADEgS,character,missing-method Man page
[[,ADEgS,numeric,missing-method Man page
[[<-,ADEgS,numeric,missing,ADEg-method Man page
[[<-,ADEgS,numeric,missing,ADEgS-method Man page
\S4method{+}{ADEg} Man page
add.ADEg Man page
add.ADEg,ADEg-method Man page
add.ADEg-methods Man page
addhist Man page
addhist,ADEg.S2-method Man page
addhist-methods Man page
addtext Man page
addtext,ADEgORtrellis-method Man page
addtext,ADEgS-method Man page
addtext-methods Man page
adeg.panel.Spatial Man page Source code
adeg.panel.edges Man page Source code
adeg.panel.hist Man page Source code
adeg.panel.join Man page Source code
adeg.panel.label Man page Source code
adeg.panel.nb Man page Source code
adeg.panel.values Man page Source code
adegpar Man page Source code
adegraphics Man page
adegraphics-package Man page
as.raster.pixmapGrey Man page Source code
as.raster.pixmapRGB Man page Source code
axis.L Man page Source code
biplot Man page
biplot.dudi Man page
breakstest Source code
cbindADEg Man page
cbindADEg,ADEgORADEgSORtrellis,ADEgORADEgSORtrellis-method Man page
cbindADEg-methods Man page
changelatticetheme Man page Source code
coordtotriangleM Source code
coordtotriangleUnity Source code
createcolorkeyimage Source code
createkeyclass Source code
createkeyvalue Source code
expand.call Source code
getcall Man page
getcall,ADEg-method Man page
getcall,ADEgS-method Man page
getcall-methods Man page
getgraphics Man page
getgraphics,ADEgS-method Man page
getgrid Source code
getlatticecall Man page
getlatticecall,ADEg-method Man page
getlist Source code
getparameters Man page
getparameters,ADEg-method Man page
getposition Source code
getpositions Man page
getpositions,ADEgS-method Man page
getstats Man page
getstats,ADEg-method Man page
getstats-methods Man page
gettrellis Man page
gettrellis,ADEg-method Man page
gettrellis,ADEg.C1-method Man page
gettrellis,ADEg.S1-method Man page
gettrellis,ADEg.S2-method Man page
gettrellis,ADEg.T-method Man page
gettrellis,ADEg.Tr-method Man page
gettrellis-methods Man page
insert Man page
insert,ADEgORtrellis,ADEg-method Man page
insert,ADEgORtrellis,ADEgS-method Man page
insert,ADEgORtrellis,missing-method Man page
insert,ADEgS,ADEg-method Man page
insert,ADEgS,ADEgS-method Man page
insert,ADEgS,missing-method Man page
insert-methods Man page
kplot Man page
kplot.foucart Man page
kplot.mbpcaiv Man page
kplot.mcoa Man page
kplot.mfa Man page
kplot.pta Man page
kplot.sepan Man page
kplot.statis Man page
kplotsepan.coa Man page
layout2position Man page Source code
length,ADEgS-method Man page
mergingList Source code
multi.ax.S2 Source code
multi.facets.C1 Source code
multi.facets.S1 Source code
multi.facets.S2 Source code
multi.facets.Tr Source code
multi.score.C1 Source code
multi.score.S1 Source code
multi.variables.C1 Source code
multi.variables.S1 Source code
multi.variables.S2 Source code
multi.variables.Tr Source code
n2mfrow Source code
names,ADEgS-method Man page
names<-,ADEgS,character-method Man page
ncludeorigin Source code
onLoad Source code
panel Man page
panel,C1.barchart-method Man page
panel,C1.curve-method Man page
panel,C1.curves-method Man page
panel,C1.density-method Man page
panel,C1.dotplot-method Man page
panel,C1.gauss-method Man page
panel,C1.hist-method Man page
panel,C1.interval-method Man page
panel,S1.boxplot-method Man page
panel,S1.class-method Man page
panel,S1.distri-method Man page
panel,S1.label-method Man page
panel,S1.match-method Man page
panel,S2.arrow-method Man page
panel,S2.class-method Man page
panel,S2.corcircle-method Man page
panel,S2.density-method Man page
panel,S2.distri-method Man page
panel,S2.image-method Man page
panel,S2.label-method Man page
panel,S2.logo-method Man page
panel,S2.match-method Man page
panel,S2.traject-method Man page
panel,S2.value-method Man page
panel,T.cont-method Man page
panel,T.image-method Man page
panel,T.value-method Man page
panel,Tr.class-method Man page
panel,Tr.label-method Man page
panel,Tr.match-method Man page
panel,Tr.traject-method Man page
panel-methods Man page
panel.symbols.grid Man page
panelbase Man page
panelbase,ADEg-method Man page
panelbase,ADEg.C1-method Man page
panelbase,ADEg.S1-method Man page
panelbase,ADEg.S2-method Man page
panelbase,ADEg.T-method Man page
panelbase,ADEg.Tr-method Man page
panelbase-methods Man page
partoadeg Source code
plot Man page
plot,ADEg,ANY-method Man page
plot,ADEg-method Man page
plot,ADEgS,ANY-method Man page
plot,ADEgS-method Man page
plot.acm Man page
plot.betcoi Man page
plot.betdpcoa Man page
plot.betrlq Man page
plot.between Man page
plot.betwitdpcoa Man page
plot.coinertia Man page
plot.discrimin Man page
plot.dpcoa Man page
plot.fca Man page
plot.foucart Man page
plot.krandboot Man page
plot.krandxval Man page
plot.mcoa Man page
plot.mfa Man page
plot.multiblock Man page
plot.multispati Man page
plot.niche Man page
plot.pcaiv Man page
plot.procuste Man page
plot.pta Man page
plot.randboot Man page
plot.randxval Man page
plot.rlq Man page
plot.sepan Man page
plot.statis Man page
plot.witcoi Man page
plot.witdpcoa Man page
plot.within Man page
plot.witrlq Man page
plotEig Man page Source code
pointLabel Source code
prepare Man page
prepare,ADEg.C1-method Man page
prepare,ADEg.S1-method Man page
prepare,ADEg.S2-method Man page
prepare,ADEg.T-method Man page
prepare,ADEg.Tr-method Man page
prepare,C1.barchart-method Man page
prepare,C1.curve-method Man page
prepare,C1.density-method Man page
prepare,C1.dotplot-method Man page
prepare,C1.gauss-method Man page
prepare,C1.hist-method Man page
prepare,C1.interval-method Man page
prepare,S1.boxplot-method Man page
prepare,S1.class-method Man page
prepare,S1.distri-method Man page
prepare,S1.label-method Man page
prepare,S1.match-method Man page
prepare,S2.arrow-method Man page
prepare,S2.class-method Man page
prepare,S2.corcircle-method Man page
prepare,S2.density-method Man page
prepare,S2.distri-method Man page
prepare,S2.image-method Man page
prepare,S2.label-method Man page
prepare,S2.logo-method Man page
prepare,S2.match-method Man page
prepare,S2.traject-method Man page
prepare,S2.value-method Man page
prepare,T.image-method Man page
prepare,T.value-method Man page
prepare,Tr.class-method Man page
prepare,Tr.label-method Man page
prepare,Tr.match-method Man page
prepare,Tr.traject-method Man page
prepare-methods Man page
print,ADEg-method Man page
print,ADEgS-method Man page
printSuperpose Man page
printSuperpose,ADEgORtrellis,ADEgORtrellis-method Man page
printSuperpose-methods Man page
proportional_map Source code
rbindADEg Man page
rbindADEg,ADEgORADEgSORtrellis,ADEgORADEgSORtrellis-method Man page
rbindADEg-methods Man page
repList Source code
replaceList Source code
s.Spatial Man page Source code
s.arrow Man page Source code
s.class Man page Source code
s.corcircle Man page Source code
s.density Man page Source code
s.distri Man page Source code
s.image Man page Source code
s.label Man page Source code
s.logo Man page Source code
s.match Man page Source code
s.traject Man page Source code
s.value Man page Source code
s1d.barchart Man page Source code
s1d.boxplot Man page Source code
s1d.class Man page Source code
s1d.curve Man page Source code
s1d.curves Man page Source code
s1d.density Man page Source code
s1d.distri Man page Source code
s1d.dotplot Man page Source code
s1d.gauss Man page Source code
s1d.hist Man page Source code
s1d.interval Man page Source code
s1d.label Man page Source code
s1d.match Man page Source code
scatter Man page
scatter.coa Man page
scatter.dudi Man page
scatter.nipals Man page
scatter.pco Man page
score Man page
score.acm Man page
score.mix Man page
score.pca Man page
screeplot Man page
screeplot.dudi Man page
separation Source code
setlatticecall Man page
setlatticecall,ADEg.C1-method Man page
setlatticecall,ADEg.S1-method Man page
setlatticecall,ADEg.S2-method Man page
setlatticecall,ADEg.T-method Man page
setlatticecall,ADEg.Tr-method Man page
setlatticecall,S1.boxplot-method Man page
setlatticecall-methods Man page
setlimits1D Man page Source code
setlimits2D Man page Source code
setposition Source code
setvalueskey Man page
show,ADEg-method Man page
show,ADEgS-method Man page
showpos Source code
sortparamADEg Man page Source code
sortparamADEgS Man page Source code
superpose Man page
superpose,ADEgORtrellis,ADEgORtrellis,ANY,ANY-method Man page
superpose,ADEgS,ADEgORtrellis,missing,ANY-method Man page
superpose,ADEgS,ADEgORtrellis,numeric,ANY-method Man page
superpose,ADEgS,ADEgORtrellis,numeric,logical-method Man page
superpose,ADEgS,ADEgS,missing,ANY-method Man page
superpose-methods Man page
symbol2pch Source code
table.image Man page Source code
table.value Man page Source code
textpos Source code
textsize Source code
triangle.class Man page Source code
triangle.label Man page Source code
triangle.match Man page Source code
triangle.traject Man page Source code
trranges Source code
update,ADEg Man page
update,ADEg-method Man page
update,ADEgS Man page
update,ADEgS-method Man page
updateADEgSposition Source code
util.chull Source code
util.ellipse Source code
zoom Man page
zoom,ADEg.S1,numeric,missing-method Man page
zoom,ADEg.S1,numeric,numeric-method Man page
zoom,ADEg.S2,numeric,missing-method Man page
zoom,ADEg.S2,numeric,numeric-method Man page
zoom-methods Man page

Files

inst
inst/doc
inst/doc/adegraphics.Rmd
inst/doc/adegraphics.html
inst/doc/adegraphics.R
tests
tests/sdistri.R
tests/sclass.R
tests/tvalue.R
tests/tdist.R
tests/shist.R
tests/smatch.R
tests/panelSpatial.R
tests/s1d.distri.R
tests/s1d.match.R
tests/simage.R
tests/s1d.gauss.R
tests/s1d.density.R
tests/s1d.boxplot.R
tests/svalue.R
tests/timage.R
tests/slogo.R
tests/nbgraph.R
tests/sarrow.R
tests/scorcircle.R
tests/straject.R
tests/sdensity.R
tests/scatter.R
tests/s1dclass.R
tests/triangle.R
tests/add.R
tests/slabel.R
tests/adegraphics.R
tests/parameter.R
tests/s1d.label.R
NAMESPACE
R
R/S2.image.R
R/utilsclass.R
R/Tr.class.R
R/S2.distri.R
R/S1.boxplot.R
R/genericMethod.R
R/T.cont.R
R/C1.interval.R
R/utils.R
R/S2.corcircle.R
R/S2.density.R
R/S2.match.R
R/Tr.traject.R
R/adeGsenv.R
R/utilskey.R
R/ade4-plot.R
R/ADEg.T.R
R/Tr.label.R
R/ADEg.S1.R
R/C1.curve.R
R/T.image.R
R/S1.label.R
R/S1.match.R
R/ade4-kplot.R
R/C1.barchart.R
R/ADEgS.R
R/C1.dotplot.R
R/utilstriangle.R
R/utilsADEgS.R
R/C1.hist.R
R/ADEg.C1.R
R/C1.density.R
R/S2.value.R
R/C1.gauss.R
R/S1.class.R
R/Tr.match.R
R/S2.arrow.R
R/multiplot.R
R/C1.curves.R
R/S2.label.R
R/S2.class.R
R/panelfunctions.R
R/ade4-scatter.R
R/S2.logo.R
R/S2.traject.R
R/T.value.R
R/S1.distri.R
R/s.Spatial.R
R/ADEg.S2.R
R/addtext.R
R/ADEg.R
R/ADEg.Tr.R
R/parameter.R
vignettes
vignettes/adegraphics.Rmd
vignettes/paramVSparam.R
vignettes/classes.png
vignettes/adegraphics.bib
vignettes/tableparamVSfunction.csv
vignettes/paramVSfunction.R
vignettes/gargsVSclass.R
vignettes/gargsVSclass.csv
MD5
build
build/vignette.rds
DESCRIPTION
man
man/S2.distri-class.Rd
man/S2.value-class.Rd
man/cbindADEg.Rd
man/sortparamADEg.Rd
man/table.image.Rd
man/s.value.Rd
man/T.cont-class.Rd
man/s.logo.Rd
man/S2.traject-class.Rd
man/ADEgS-class.Rd
man/triangle.match.Rd
man/changelatticetheme.Rd
man/ADEg.C1-class.Rd
man/Tr.match-class.Rd
man/S2.class-class.Rd
man/s.traject.Rd
man/setlimits1D.Rd
man/prepare-methods.Rd
man/s.match.Rd
man/panel-methods.Rd
man/s1d.curves.Rd
man/s1d.class.Rd
man/T.value-class.Rd
man/triangle.traject.Rd
man/s.arrow.Rd
man/C1.barchart-class.Rd
man/S2.corcircle-class.Rd
man/s1d.density.Rd
man/s1d.hist.Rd
man/s1d.barchart.Rd
man/s.label.Rd
man/s.Spatial.Rd
man/ADEg.T-class.Rd
man/adeg.panel.values.Rd
man/C1.interval-class.Rd
man/ADEg-class.Rd
man/s1d.curve.Rd
man/adegpar.Rd
man/S2.density-class.Rd
man/S2.image-class.Rd
man/s.image.Rd
man/ADEg.S2-class.Rd
man/C1.curve-class.Rd
man/triangle.label.Rd
man/adegraphics-internal.Rd
man/S1.boxplot-class.Rd
man/S2.label-class.Rd
man/s.class.Rd
man/plotEig.Rd
man/S1.match-class.Rd
man/adeg.panel.label.Rd
man/C1.gauss-class.Rd
man/adeg.panel.join.Rd
man/s1d.distri.Rd
man/ADEgS.Rd
man/s1d.dotplot.Rd
man/zoom.Rd
man/insert.Rd
man/Tr.label-class.Rd
man/add.ADEg.Rd
man/S1.class-class.Rd
man/s.corcircle.Rd
man/T.image-class.Rd
man/s1d.interval.Rd
man/s.density.Rd
man/s1d.boxplot.Rd
man/triangle.class.Rd
man/adeg.panel.hist.Rd
man/C1.hist-class.Rd
man/s1d.match.Rd
man/getcall-methods.Rd
man/S2.arrow-class.Rd
man/Tr.traject-class.Rd
man/S1.label-class.Rd
man/table.value.Rd
man/C1.density-class.Rd
man/s1d.label.Rd
man/ADEg.Tr-class.Rd
man/adeg.panel.Spatial.Rd
man/S2.logo-class.Rd
man/Tr.class-class.Rd
man/addtext.Rd
man/adeg.panel.nb.Rd
man/s.distri.Rd
man/s1d.gauss.Rd
man/plot.Rd
man/addhist.Rd
man/ADEg.S1-class.Rd
man/S2.match-class.Rd
man/superpose.Rd
man/adegraphics-package.Rd
man/layout2position.Rd
man/C1.dotplot-class.Rd
man/S1.distri-class.Rd
adegraphics documentation built on May 19, 2017, 6:04 p.m.

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