adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

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Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.

Author
Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Date of publication
2016-03-02 12:15:39
Maintainer
Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
License
GPL (>= 2)
Version
1.0-5
URLs

View on CRAN

Man pages

add.ADEg
Superpose an new 'ADEg' graph to the previous ones plotted
addhist
Adds histograms and density lines against a bi-dimensional...
addtext
Adds labels on graphics.
ADEg.C1-class
Class 'ADEg.C1'
ADEg-class
Class 'ADEg'
adeg.panel.hist
Panel function for adding histograms.
adeg.panel.join
Panel function for joining lines.
adeg.panel.label
Panel function for adding labels.
adeg.panel.nb
Panel functions for adding graphs.
adeg.panel.Spatial
Panel function for adding spatial objects.
adeg.panel.values
Panel function drawing a third variable into a...
adegpar
Handling ADEg graphical parameters
adegraphics-internal
For internal use only
adegraphics-package
Graphical objects for ade4 functions (and more)
ADEgS
Creation of 'ADEgS' objects
ADEg.S1-class
Class 'ADEg.S1'
ADEg.S2-class
Class 'ADEg.S2'
ADEgS-class
Class '"ADEgS"'
ADEg.T-class
Class 'ADEg.T'
ADEg.Tr-class
Class '"ADEg.Tr"'
C1.barchart-class
Class 'C1.barchart'
C1.curve-class
Class 'C1.curve'
C1.density-class
Class 'C1.density'
C1.dotplot-class
Class 'C1.dotplot'
C1.gauss-class
Class 'C1.gauss'
C1.hist-class
Class 'C1.hist'
C1.interval-class
Class 'C1.interval'
cbindADEg
Combine 'ADEg' objects by columns or rows
changelatticetheme
Change the 'lattice' theme used for 'adegraphics'
getcall-methods
Method for 'ADEg' and 'ADEgS' objects
insert
Insert a graphic into an existing one
layout2position
Transform a layout matrix into a position one
panel-methods
Methods 'panel' for 'ADEg' objects
plot
Methods to display the outputs of an analysis performed with...
plotEig
Plot a barchart of eigen values
prepare-methods
Methods 'prepare' for 'ADEg' objects
S1.boxplot-class
Class 'S1.boxplot'
S1.class-class
Class 'S1.class'
s1d.barchart
1-D plot of a numeric score by bars
s1d.boxplot
1-D box plot of a numeric score partitioned in classes...
s1d.class
1-D plot of a numeric score partitioned in classes (levels of...
s1d.curve
1-D plot of a numeric score linked by curves
s1d.density
1-D plot of a numeric score by density curves
s1d.distri
1-D plot of a numeric score by means/standard deviations...
s1d.dotplot
1-D plot of a numeric score by dots
s1d.gauss
1-D plot of a numeric score by Gaussian curves
s1d.hist
1-D plot of a numeric score by bars
s1d.interval
1-D plot of the interval between two numeric scores
S1.distri-class
Class 'S1.distri'
s1d.label
1-D plot of a numeric score with labels
s1d.match
1-D plot of the matching between two numeric scores
S1.label-class
Class 'S1.label'
S1.match-class
Class 'S1.match'
S2.arrow-class
Class 'S2.arrow'
S2.class-class
Class 'S2.class'
S2.corcircle-class
Class 'S2.corcircle'
S2.density-class
Class 'S2.density'
S2.distri-class
Class 'S2.distri'
S2.image-class
Class 'S2.image'
S2.label-class
Class 'S2.label'
S2.logo-class
Class 'S2.logo'
S2.match-class
Class 'S2.match'
S2.traject-class
Class 'S2.traject'
S2.value-class
Class 'S2.value'
s.arrow
2-D scatter plot with arrows
s.class
2-D scatter plot with a partition in classes (levels of a...
s.corcircle
Correlation circle
s.density
2-D scatter plot with kernel density estimation
s.distri
2-D scatter plot with means/standard deviations computed...
setlimits1D
Computes limits for 1D and 2D displays.
s.image
2-D scatter plot with loess estimation of an additional...
s.label
2-D scatter plot with labels
s.logo
2-D scatter plot with logos (bitmap objects)
s.match
2-D scatter plot of the matching between two sets of...
sortparamADEg
Sort a sequence of graphical parameters
s.Spatial
Mapping of a Spatial* object
s.traject
2-D scatter plot with trajectories
superpose
Superpose two graphics
s.value
2-D scatter plot with proportional symbols (bubble plot)
table.image
Heat map-like representation with colored cells
table.value
Heat map-like representation with proportional symbols
T.cont-class
Class 'T.cont'
T.image-class
Class 'T.image'
Tr.class-class
Class 'Tr.class'
triangle.class
Ternary plot with a partition in classes (levels of a factor)
triangle.label
Ternary plot with labels
triangle.match
Ternary plot of the matching between two sets of coordinates
triangle.traject
Ternary plot with trajectories
Tr.label-class
Class 'Tr.label'
Tr.match-class
Class 'Tr.match'
Tr.traject-class
Class 'Tr.traject'
T.value-class
Class 'T.value'
zoom
Zoom in or out

Files in this package

adegraphics
adegraphics/inst
adegraphics/inst/doc
adegraphics/inst/doc/adegraphics.Rmd
adegraphics/inst/doc/adegraphics.html
adegraphics/inst/doc/adegraphics.R
adegraphics/tests
adegraphics/tests/sdistri.R
adegraphics/tests/sclass.R
adegraphics/tests/tvalue.R
adegraphics/tests/tdist.R
adegraphics/tests/shist.R
adegraphics/tests/smatch.R
adegraphics/tests/panelSpatial.R
adegraphics/tests/s1d.distri.R
adegraphics/tests/s1d.match.R
adegraphics/tests/simage.R
adegraphics/tests/s1d.gauss.R
adegraphics/tests/s1d.density.R
adegraphics/tests/s1d.boxplot.R
adegraphics/tests/svalue.R
adegraphics/tests/timage.R
adegraphics/tests/slogo.R
adegraphics/tests/nbgraph.R
adegraphics/tests/sarrow.R
adegraphics/tests/scorcircle.R
adegraphics/tests/straject.R
adegraphics/tests/sdensity.R
adegraphics/tests/scatter.R
adegraphics/tests/s1dclass.R
adegraphics/tests/triangle.R
adegraphics/tests/add.R
adegraphics/tests/slabel.R
adegraphics/tests/adegraphics.R
adegraphics/tests/parameter.R
adegraphics/tests/s1d.label.R
adegraphics/NAMESPACE
adegraphics/R
adegraphics/R/S2.image.R
adegraphics/R/utilsclass.R
adegraphics/R/Tr.class.R
adegraphics/R/S2.distri.R
adegraphics/R/S1.boxplot.R
adegraphics/R/genericMethod.R
adegraphics/R/T.cont.R
adegraphics/R/C1.interval.R
adegraphics/R/utils.R
adegraphics/R/S2.corcircle.R
adegraphics/R/S2.density.R
adegraphics/R/S2.match.R
adegraphics/R/Tr.traject.R
adegraphics/R/adeGsenv.R
adegraphics/R/utilskey.R
adegraphics/R/ade4-plot.R
adegraphics/R/ADEg.T.R
adegraphics/R/Tr.label.R
adegraphics/R/ADEg.S1.R
adegraphics/R/C1.curve.R
adegraphics/R/T.image.R
adegraphics/R/S1.label.R
adegraphics/R/S1.match.R
adegraphics/R/ade4-kplot.R
adegraphics/R/C1.barchart.R
adegraphics/R/ADEgS.R
adegraphics/R/C1.dotplot.R
adegraphics/R/utilstriangle.R
adegraphics/R/utilsADEgS.R
adegraphics/R/C1.hist.R
adegraphics/R/ADEg.C1.R
adegraphics/R/C1.density.R
adegraphics/R/S2.value.R
adegraphics/R/C1.gauss.R
adegraphics/R/S1.class.R
adegraphics/R/Tr.match.R
adegraphics/R/S2.arrow.R
adegraphics/R/multiplot.R
adegraphics/R/S2.label.R
adegraphics/R/S2.class.R
adegraphics/R/panelfunctions.R
adegraphics/R/ade4-scatter.R
adegraphics/R/S2.logo.R
adegraphics/R/S2.traject.R
adegraphics/R/T.value.R
adegraphics/R/S1.distri.R
adegraphics/R/s.Spatial.R
adegraphics/R/ADEg.S2.R
adegraphics/R/add.R
adegraphics/R/ADEg.R
adegraphics/R/ADEg.Tr.R
adegraphics/R/parameter.R
adegraphics/vignettes
adegraphics/vignettes/adegraphics.Rmd
adegraphics/vignettes/paramVSparam.R
adegraphics/vignettes/classes.png
adegraphics/vignettes/adegraphics.bib
adegraphics/vignettes/tableparamVSfunction.csv
adegraphics/vignettes/paramVSfunction.R
adegraphics/vignettes/gargsVSclass.R
adegraphics/vignettes/gargsVSclass.csv
adegraphics/MD5
adegraphics/build
adegraphics/build/vignette.rds
adegraphics/DESCRIPTION
adegraphics/man
adegraphics/man/S2.distri-class.Rd
adegraphics/man/S2.value-class.Rd
adegraphics/man/cbindADEg.Rd
adegraphics/man/sortparamADEg.Rd
adegraphics/man/table.image.Rd
adegraphics/man/s.value.Rd
adegraphics/man/T.cont-class.Rd
adegraphics/man/s.logo.Rd
adegraphics/man/S2.traject-class.Rd
adegraphics/man/ADEgS-class.Rd
adegraphics/man/triangle.match.Rd
adegraphics/man/changelatticetheme.Rd
adegraphics/man/ADEg.C1-class.Rd
adegraphics/man/Tr.match-class.Rd
adegraphics/man/S2.class-class.Rd
adegraphics/man/s.traject.Rd
adegraphics/man/setlimits1D.Rd
adegraphics/man/prepare-methods.Rd
adegraphics/man/s.match.Rd
adegraphics/man/panel-methods.Rd
adegraphics/man/s1d.class.Rd
adegraphics/man/T.value-class.Rd
adegraphics/man/triangle.traject.Rd
adegraphics/man/s.arrow.Rd
adegraphics/man/C1.barchart-class.Rd
adegraphics/man/S2.corcircle-class.Rd
adegraphics/man/s1d.density.Rd
adegraphics/man/s1d.hist.Rd
adegraphics/man/s1d.barchart.Rd
adegraphics/man/s.label.Rd
adegraphics/man/s.Spatial.Rd
adegraphics/man/ADEg.T-class.Rd
adegraphics/man/adeg.panel.values.Rd
adegraphics/man/C1.interval-class.Rd
adegraphics/man/ADEg-class.Rd
adegraphics/man/s1d.curve.Rd
adegraphics/man/adegpar.Rd
adegraphics/man/S2.density-class.Rd
adegraphics/man/S2.image-class.Rd
adegraphics/man/s.image.Rd
adegraphics/man/ADEg.S2-class.Rd
adegraphics/man/C1.curve-class.Rd
adegraphics/man/triangle.label.Rd
adegraphics/man/adegraphics-internal.Rd
adegraphics/man/S1.boxplot-class.Rd
adegraphics/man/S2.label-class.Rd
adegraphics/man/s.class.Rd
adegraphics/man/plotEig.Rd
adegraphics/man/S1.match-class.Rd
adegraphics/man/adeg.panel.label.Rd
adegraphics/man/C1.gauss-class.Rd
adegraphics/man/adeg.panel.join.Rd
adegraphics/man/s1d.distri.Rd
adegraphics/man/ADEgS.Rd
adegraphics/man/s1d.dotplot.Rd
adegraphics/man/zoom.Rd
adegraphics/man/insert.Rd
adegraphics/man/Tr.label-class.Rd
adegraphics/man/add.ADEg.Rd
adegraphics/man/S1.class-class.Rd
adegraphics/man/s.corcircle.Rd
adegraphics/man/T.image-class.Rd
adegraphics/man/s1d.interval.Rd
adegraphics/man/s.density.Rd
adegraphics/man/s1d.boxplot.Rd
adegraphics/man/triangle.class.Rd
adegraphics/man/adeg.panel.hist.Rd
adegraphics/man/C1.hist-class.Rd
adegraphics/man/s1d.match.Rd
adegraphics/man/getcall-methods.Rd
adegraphics/man/S2.arrow-class.Rd
adegraphics/man/Tr.traject-class.Rd
adegraphics/man/S1.label-class.Rd
adegraphics/man/table.value.Rd
adegraphics/man/C1.density-class.Rd
adegraphics/man/s1d.label.Rd
adegraphics/man/ADEg.Tr-class.Rd
adegraphics/man/adeg.panel.Spatial.Rd
adegraphics/man/S2.logo-class.Rd
adegraphics/man/Tr.class-class.Rd
adegraphics/man/addtext.Rd
adegraphics/man/adeg.panel.nb.Rd
adegraphics/man/s.distri.Rd
adegraphics/man/s1d.gauss.Rd
adegraphics/man/plot.Rd
adegraphics/man/addhist.Rd
adegraphics/man/ADEg.S1-class.Rd
adegraphics/man/S2.match-class.Rd
adegraphics/man/superpose.Rd
adegraphics/man/adegraphics-package.Rd
adegraphics/man/layout2position.Rd
adegraphics/man/C1.dotplot-class.Rd
adegraphics/man/S1.distri-class.Rd