agricolae: Statistical Procedures for Agricultural Research

Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.

Install the latest version of this package by entering the following in R:
install.packages("agricolae")
AuthorFelipe de Mendiburu
Date of publication2016-06-12 23:33:27
MaintainerFelipe de Mendiburu <f.mendiburu@cgiar.org>
LicenseGPL
Version1.2-4
http://tarwi.lamolina.edu.pe/~fmendiburu

View on CRAN

Man pages

agricolae-package: Statistical Procedures for Agricultural Research

AMMI: AMMI Analysis

AMMI.contour: AMMI contour

audpc: Calculating the absolute or relative value of the AUDPC

audps: The Area Under the Disease Progress Stairs

bar.err: Plotting the standard error or standard deviance of a...

bar.group: Plotting the multiple comparison of means

BIB.test: Finding the Variance Analysis of the Balanced Incomplete...

carolina: North Carolina Designs I, II and III

Chz2006: Data amendment Carhuaz 2006

CIC: Data for late blight of potatoes

clay: Data of Ralstonia population in clay soil

ComasOxapampa: Data AUDPC Comas - Oxapampa

consensus: consensus of clusters

corn: Data of corn

correl: Correlation Coefficient

correlation: Correlation analysis. Methods of Pearson, Spearman, Kendall...

cotton: Data of cotton

cv.model: Coefficient of the experiment variation

cv.similarity: Coefficient of the similarity matrix variation

DAU.test: Finding the Variance Analysis of the Augmented block Design

DC: Data for the analysis of carolina genetic design

delete.na: Omitting the rows or columns with missing observations of a...

design.ab: Design of experiments for a factorial

design.alpha: Alpha design type (0,1)

design.bib: Randomized Balanced Incomplete Block Designs. BIB

design.crd: Completely Randomized Design

design.cyclic: Cyclic designs

design.dau: Augmented block design

design.graeco: Graeco - latin square design

design.lattice: Lattice designs

design.lsd: Latin Square Design

design.rcbd: Randomized Complete Block Design

design.split: Split Plot Design

design.strip: Strip Plot Design

diffograph: Plotting the multiple comparison of means

disease: Data evaluation of the disease overtime

duncan.test: Duncan's new multiple range test

durbin.test: Durbin test and multiple comparison of treatments

friedman: Friedman test and multiple comparison of treatments

frijol: Data of frijol

genxenv: Data of potato yield in a different environment

Glycoalkaloids: Data Glycoalkaloids

graph.freq: Histogram

grass: Data for Friedman test

greenhouse: Data in greenhouse

growth: Data growth of trees

haynes: Data of AUDPC for nonparametrical stability analysis

Hco2006: Data amendment Huanuco 2006

hcut: Cut tree of consensus

heterosis: Data of potato, Heterosis

hgroups: groups of hclust

HSD.test: Multiple comparisons: Tukey

huasahuasi: Data: Rainfall thresholds as support for timing fungicide...

indexAMMI: AMMI index and yield stability

index.bio: Biodiversity Index

index.smith: Uniformity soil. Smith's Index of Soil Heterogeneity

intervals.freq: Class intervals

join.freq: Join class for histogram

kendall: Correlation of Kendall

kruskal: Kruskal Wallis test and multiple comparison of treatments.

kurtosis: Finding the Kurtosis coefficient

lastC: Setting the last character of a chain

lateblight: LATEBLIGHT - Simulator for potato late blight Version LB2004

lineXtester: Line x Tester Analysis

LSD.test: Multiple comparisons, "Least significant difference" and...

LxT: Data Line by tester

markers: Data of molecular markers

melon: Data of yield of melon in a Latin square experiment

montecarlo: Random generation by Montecarlo

natives: Data of native potato

nonadditivity: Nonadditivity model test

normal.freq: Normal curve on the histogram

ogive.freq: Plotting the ogive from a histogram

order.group: Ordering the treatments according to the multiple comparison

orderPvalue: Grouping the treatments averages in a comparison with a...

order.stat: Grouping the treatments averages in a comparison with a...

pamCIP: Data Potato Wild

paracsho: Data of Paracsho biodiversity

path.analysis: Path Analysis

PBIB.test: Analysis of the Partially Balanced Incomplete Block Design

plotAMMI: PLOT AMMI

plot.graph.freq: Histogram

plots: Data for an analysis in split-plot

plrv: Data clones from the PLRV population

polygon.freq: The polygon of frequency on the histogram

potato: Data of cutting

ralstonia: Data of assessment of the population in the soil...

reg.homog: Homologation of regressions

REGW.test: Ryan, Einot and Gabriel and Welsch multiple range test

resampling.cv: Resampling to find the optimal number of markers

resampling.model: Resampling for linear models

rice: Data of Grain yield of rice variety IR8

RioChillon: Data and analysis Mother and baby trials

scheffe.test: Multiple comparisons, scheffe

similarity: Matrix of similarity in binary data

simulation.model: Simulation of the linear model under normality

sinRepAmmi: Data for AMMI without repetition

skewness: Finding the skewness coefficient

SNK.test: Student-Newman-Keuls (SNK)

soil: Data of soil analysis for 13 localities

sp.plot: Splip-Plot analysis

ssp.plot: Split-split-Plot analysis

stability.nonpar: Nonparametric stability analysis

stability.par: Stability analysis. SHUKLA'S STABILITY VARIANCE AND KANG'S

stat.freq: Descriptive measures of grouped data

strip.plot: Strip-Plot analysis

sturges.freq: Class intervals for a histogram, the rule of Sturges

summary.graph.freq: frequency Table of a Histogram

sweetpotato: Data of sweetpotato yield

table.freq: frequency Table of a Histogram

tapply.stat: Statistics of data grouped by factors

VanderWarden: Multiple comparisons. The van der Waerden (Normal Scores)

vark: Variance K, ties, Kendall

waller: Computations of Bayesian t-values for multiple comparisons

waller.test: Multiple comparisons, Waller-Duncan

wilt: Data of Bacterial Wilt (AUDPC) and soil

yacon: Data Yacon

zigzag: order plot in serpentine

Functions

agricolae Man page
agricolae-package Man page
AMMI Man page
AMMI.contour Man page
audpc Man page
audps Man page
bar.err Man page
bar.group Man page
BIB.test Man page
carolina Man page
Chz2006 Man page
CIC Man page
clay Man page
ComasOxapampa Man page
consensus Man page
corn Man page
correl Man page
correlation Man page
cotton Man page
cv.model Man page
cv.similarity Man page
DAU.test Man page
DC Man page
delete.na Man page
design.ab Man page
design.alpha Man page
design.bib Man page
design.crd Man page
design.cyclic Man page
design.dau Man page
design.graeco Man page
design.lattice Man page
design.lsd Man page
design.rcbd Man page
design.split Man page
design.strip Man page
diffograph Man page
disease Man page
duncan.test Man page
durbin.test Man page
friedman Man page
frijol Man page
genxenv Man page
Glycoalkaloids Man page
graph.freq Man page
grass Man page
greenhouse Man page
growth Man page
haynes Man page
Hco2006 Man page
hcut Man page
heterosis Man page
hgroups Man page
HSD.test Man page
huasahuasi Man page
index.AMMI Man page
index.bio Man page
index.smith Man page
intervals.freq Man page
join.freq Man page
kendall Man page
kruskal Man page
kurtosis Man page
lastC Man page
lateblight Man page
lineXtester Man page
LSD.test Man page
LxT Man page
markers Man page
melon Man page
montecarlo Man page
natives Man page
nonadditivity Man page
normal.freq Man page
ogive.freq Man page
order.group Man page
orderPvalue Man page
order.stat Man page
pamCIP Man page
paracsho Man page
path.analysis Man page
PBIB.test Man page
plot.AMMI Man page
plot.graph.freq Man page
plots Man page
plrv Man page
polygon.freq Man page
potato Man page
ralstonia Man page
reg.homog Man page
REGW.test Man page
resampling.cv Man page
resampling.model Man page
rice Man page
RioChillon Man page
scheffe.test Man page
similarity Man page
simulation.model Man page
sinRepAmmi Man page
skewness Man page
SNK.test Man page
soil Man page
sp.plot Man page
ssp.plot Man page
stability.nonpar Man page
stability.par Man page
stat.freq Man page
strip.plot Man page
sturges.freq Man page
summary.graph.freq Man page
sweetpotato Man page
table.freq Man page
tapply.stat Man page
vark Man page
waerden.test Man page
waller Man page
waller.test Man page
wilt Man page
yacon Man page
zigzag Man page

Files

inst
inst/doc
inst/doc/tutorial.Rnw
inst/doc/tutorial.pdf
inst/doc/tutorial.R
inst/external
inst/external/severity.csv
inst/external/weather.csv
NAMESPACE
NEWS
data
data/DC.rda
data/paracsho.rda
data/genxenv.rda
data/yacon.rda
data/frijol.rda
data/rice.rda
data/wilt.rda
data/pamCIP.rda
data/RioChillon.rda
data/markers.rda
data/grass.rda
data/Chz2006.rda
data/growth.rda
data/disease.rda
data/corn.rda
data/potato.rda
data/plrv.rda
data/LxT.rda
data/melon.rda
data/clay.rda
data/ralstonia.rda
data/Hco2006.rda
data/cotton.rda
data/plots.rda
data/soil.rda
data/ComasOxapampa.rda
data/natives.rda
data/CIC.rda
data/Glycoalkaloids.rda
data/greenhouse.rda
data/sinRepAmmi.rda
data/sweetpotato.rda
data/haynes.rda
data/heterosis.rda
data/huasahuasi.rda
R
R/summary.graph.freq.R R/audpc.R R/polygon.freq.R R/intervals.freq.R R/delete.na.R R/order.group.R R/cv.similarity.R R/design.strip.R R/reg.homog.R R/design.lattice.R R/index.smith.R R/stability.nonpar.R R/waller.test.R R/nonadditivity.R R/path.analysis.R R/design.youden.R R/LSD.test.R R/resampling.model.R R/waerden.test.R R/design.split.R R/design.rcbd.R R/diffograph.R R/normal.freq.R R/lineXtester.R R/scheffe.test.R R/design.graeco.R R/BIB.test.R R/stat.freq.R R/audps.R R/friedman.R R/design.crd.R R/duncan.test.R R/design.ab.R R/design.cyclic.R R/lateblight.R R/design.dau.R R/order.stat.R R/PBIB.test.R R/strip.plot.R R/bar.group.R R/resampling.cv.R R/sp.plot.R R/correl.R R/stability.par.R R/design.lsd.R R/kendall.R R/table.freq.R R/montecarlo.R R/ssp.plot.R R/ogive.freq.R R/design.alpha.R R/weatherSeverity.R R/cv.model.R R/zigzag.R R/join.freq.R R/kruskal.R R/waller.R R/skewness.R R/index.bio.R R/hcut.R R/HSD.test.R R/Median.test.R R/design.bib.R R/REGW.test.R R/SNK.test.R R/carolina.R R/tapply.stat.R R/lastC.R R/simulation.model.R R/index.AMMI.R R/similarity.R R/hgroups.R R/bar.err.R R/kurtosis.R R/orderPvalue.R R/AMMI.R R/graph.freq.R R/vark.R R/AMMI.contour.R R/sturges.freq.R R/DAU.test.R R/plot.AMMI.R R/plot.graph.freq.R R/durbin.test.R R/correlation.R R/consensus.R
vignettes
vignettes/tutorial.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ComasOxapampa.Rd man/lateblight.Rd man/Glycoalkaloids.Rd man/audpc.Rd man/sweetpotato.Rd man/duncan.test.Rd man/delete.na.Rd man/simulation.model.Rd man/paracsho.Rd man/scheffe.test.Rd man/agricolae-package.Rd man/potato.Rd man/kruskal.Rd man/graph.freq.Rd man/markers.Rd man/cotton.Rd man/summary.graph.freq.Rd man/ogive.freq.Rd man/strip.plot.Rd man/design.bib.Rd man/kendall.Rd man/nonadditivity.Rd man/genxenv.Rd man/carolina.Rd man/diffograph.Rd man/join.freq.Rd man/table.freq.Rd man/Hco2006.Rd man/design.split.Rd man/VanderWarden.Rd man/reg.homog.Rd man/RioChillon.Rd man/BIB.test.Rd man/plotAMMI.Rd man/skewness.Rd man/resampling.cv.Rd man/pamCIP.Rd man/similarity.Rd man/design.ab.Rd man/correlation.Rd man/index.smith.Rd man/ssp.plot.Rd man/normal.freq.Rd man/yacon.Rd man/index.bio.Rd man/waller.Rd man/AMMI.Rd man/hcut.Rd man/corn.Rd man/grass.Rd
man/weatherSeverity.rd
man/durbin.test.Rd man/greenhouse.Rd man/waller.test.Rd man/bar.err.Rd man/hgroups.Rd man/path.analysis.Rd man/SNK.test.Rd man/vark.Rd man/tapply.stat.Rd man/sp.plot.Rd man/rice.Rd man/plrv.Rd
man/design.youden.rd
man/design.lsd.Rd man/LSD.test.Rd man/consensus.Rd man/lastC.Rd man/kurtosis.Rd man/heterosis.Rd man/cv.model.Rd man/orderPvalue.Rd man/DAU.test.Rd man/HSD.test.Rd man/huasahuasi.Rd man/growth.Rd man/correl.Rd man/montecarlo.Rd man/AMMI.contour.Rd man/design.cyclic.Rd man/design.lattice.Rd man/audps.Rd man/plots.Rd man/design.graeco.Rd man/CIC.Rd man/natives.Rd man/stat.freq.Rd
man/median.rd
man/clay.Rd man/soil.Rd man/LxT.Rd man/melon.Rd man/polygon.freq.Rd man/disease.Rd man/plot.graph.freq.Rd man/sturges.freq.Rd man/design.rcbd.Rd man/resampling.model.Rd man/friedman.Rd man/design.strip.Rd man/sinRepAmmi.Rd man/cv.similarity.Rd man/zigzag.Rd man/indexAMMI.Rd man/REGW.test.Rd man/PBIB.test.Rd man/order.stat.Rd man/DC.Rd man/design.crd.Rd man/ralstonia.Rd man/Chz2006.Rd man/stability.par.Rd man/design.dau.Rd man/bar.group.Rd man/intervals.freq.Rd man/frijol.Rd man/haynes.Rd man/design.alpha.Rd man/wilt.Rd man/lineXtester.Rd man/stability.nonpar.Rd man/order.group.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.