Nothing
data/amExample2.R
In amregtest: Runs Allelematch Regression Tests
amExample2 <-
structure(list(sampleId = structure(c(1L, 62L, 73L, 84L, 95L,
106L, 117L, 128L, 138L, 2L, 12L, 23L, 34L, 44L, 55L, 58L, 59L,
60L, 61L, 63L, 64L, 65L, 66L, 67L, 68L, 69L, 70L, 71L, 72L, 74L,
75L, 76L, 77L, 78L, 79L, 80L, 81L, 82L, 83L, 85L, 86L, 87L, 88L,
89L, 90L, 91L, 92L, 93L, 94L, 96L, 97L, 98L, 99L, 100L, 101L,
102L, 103L, 104L, 105L, 107L, 108L, 109L, 110L, 111L, 112L, 113L,
114L, 115L, 116L, 118L, 119L, 120L, 121L, 122L, 123L, 124L, 125L,
126L, 127L, 129L, 130L, 131L, 132L, 133L, 134L, 135L, 136L, 137L,
139L, 140L, 141L, 142L, 143L, 144L, 145L, 146L, 147L, 148L, 3L,
4L, 5L, 6L, 7L, 8L, 9L, 10L, 11L, 13L, 14L, 15L, 16L, 17L, 18L,
19L, 20L, 21L, 22L, 24L, 25L, 26L, 27L, 28L, 29L, 30L, 31L, 32L,
33L, 35L, 36L, 37L, 38L, 39L, 40L, 41L, 42L, 43L, 45L, 46L, 47L,
48L, 49L, 50L, 51L, 52L, 53L, 54L, 56L, 57L), levels = c("1",
"10", "100", "101", "102", "103", "105", "106", "107", "108",
"109", "11", "110", "111", "112", "113", "114", "115", "116",
"117", "118", "119", "12", "120", "121", "122", "123", "124",
"125", "126", "127", "128", "129", "13", "130", "131", "132",
"134", "135", "136", "137", "138", "139", "14", "140", "141",
"142", "143", "144", "145", "146", "147", "148", "149", "15",
"150", "151", "16", "17", "18", "19", "2", "20", "21", "22",
"23", "24", "25", "26", "27", "28", "29", "3", "30", "31", "32",
"33", "34", "35", "36", "37", "38", "39", "4", "40", "41", "42",
"43", "44", "45", "46", "47", "48", "49", "5", "50", "51", "52",
"53", "54", "55", "56", "57", "58", "59", "6", "60", "61", "62",
"63", "64", "65", "66", "67", "68", "69", "7", "70", "71", "72",
"73", "74", "75", "76", "77", "78", "79", "8", "80", "81", "82",
"83", "85", "86", "87", "88", "89", "9", "90", "91", "92", "93",
"94", "95", "96", "97", "98", "99"), class = "factor"), knownIndividual = structure(c(1L,
2L, 2L, 3L, 3L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 9L, 10L, 10L, 11L,
11L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 18L, 19L, 20L, 21L, 22L,
23L, 23L, 23L, 24L, 25L, 25L, 26L, 27L, 28L, 29L, 29L, 30L, 30L,
31L, 31L, 32L, 32L, 33L, 33L, 34L, 35L, 36L, 37L, 37L, 38L, 39L,
40L, 41L, 41L, 42L, 43L, 44L, 45L, 45L, 46L, 46L, 47L, 47L, 47L,
48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 52L, 53L, 53L, 54L, 55L,
55L, 56L, 57L, 58L, 58L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L,
63L, 64L, 64L, 65L, 66L, 67L, 67L, 68L, 69L, 69L, 70L, 71L, 71L,
71L, 72L, 72L, 73L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 78L, 79L,
80L, 80L, 81L, 82L, 83L, 84L, 85L, 86L, 86L, 86L, 87L, 88L, 89L,
89L, 89L, 90L, 91L, 92L, 93L, 93L, 93L, 94L, 95L, 96L, 96L, 97L,
98L, 99L), levels = c("AAA", "AAB", "AAC", "AAD", "AAE", "AAF",
"AAG", "AAH", "AAI", "AAJ", "AAK", "AAL", "AAM", "AAN", "AAO",
"AAP", "AAQ", "AAR", "AAS", "AAT", "AAU", "AAV", "AAW", "AAX",
"AAY", "AAZ", "ABA", "ABB", "ABC", "ABD", "ABE", "ABF", "ABG",
"ABH", "ABI", "ABJ", "ABK", "ABL", "ABM", "ABN", "ABO", "ABP",
"ABQ", "ABR", "ABS", "ABT", "ABU", "ABV", "ABW", "ABX", "ABY",
"ABZ", "ACA", "ACB", "ACC", "ACD", "ACE", "ACF", "ACG", "ACH",
"ACI", "ACJ", "ACK", "ACL", "ACM", "ACN", "ACO", "ACP", "ACQ",
"ACR", "ACS", "ACT", "ACU", "ACV", "ACW", "ACX", "ACY", "ACZ",
"ADA", "ADB", "ADC", "ADD", "ADE", "ADF", "ADG", "ADH", "ADJ",
"ADK", "ADL", "ADM", "ADN", "ADO", "ADP", "ADQ", "ADR", "ADS",
"ADT", "ADU", "ADV"), class = "factor"), LOC1a = structure(c(2L,
2L, 2L, 5L, 5L, 5L, 3L, 2L, 5L, 4L, 2L, 4L, 4L, 4L, 4L, 2L, 2L,
4L, 5L, 5L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 5L, 2L, 2L, 2L, 4L,
2L, 2L, 4L, 2L, 5L, 2L, 2L, 5L, 5L, 5L, 5L, 1L, 3L, 7L, 7L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 2L, 4L, 2L, 2L, 7L, 7L,
4L, 4L, 4L, 2L, 2L, 2L, 2L, 2L, 7L, 2L, 2L, 1L, 4L, 4L, 2L, 2L,
2L, 4L, 4L, 2L, 2L, 2L, 2L, 7L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
5L, 2L, 2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 4L, 4L, 4L, 1L, 6L, 2L,
2L, 4L, 4L, 4L, 2L, 2L, 2L, 4L, 4L, 2L, 4L, 1L, 2L, 2L, 5L, 1L,
5L, 4L, 2L, 4L, 4L, 4L, 4L, 4L, 2L, 4L, 4L, 4L, 4L, 2L, 4L, 4L,
4L, 4L, 1L), levels = c("-99", "101", "102", "107", "111", "114",
"116"), class = "factor"), LOC1b = structure(c(6L, 6L, 6L, 6L,
6L, 6L, 6L, 6L, 6L, 6L, 3L, 6L, 6L, 4L, 4L, 2L, 2L, 3L, 4L, 6L,
4L, 3L, 4L, 4L, 4L, 6L, 6L, 2L, 6L, 2L, 2L, 2L, 6L, 4L, 4L, 6L,
6L, 6L, 6L, 6L, 6L, 6L, 4L, 4L, 1L, 6L, 6L, 6L, 4L, 2L, 4L, 3L,
3L, 3L, 6L, 6L, 6L, 6L, 6L, 3L, 3L, 4L, 4L, 6L, 6L, 4L, 4L, 4L,
2L, 2L, 2L, 3L, 2L, 6L, 4L, 4L, 1L, 4L, 4L, 6L, 4L, 4L, 6L, 4L,
6L, 6L, 2L, 6L, 6L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 6L, 6L, 6L, 6L,
6L, 6L, 6L, 6L, 3L, 6L, 6L, 6L, 6L, 6L, 1L, 5L, 3L, 3L, 6L, 6L,
6L, 6L, 2L, 4L, 3L, 3L, 4L, 6L, 1L, 2L, 6L, 6L, 1L, 6L, 6L, 2L,
6L, 6L, 6L, 4L, 4L, 4L, 3L, 3L, 3L, 6L, 3L, 6L, 6L, 3L, 4L, 1L
), levels = c("-99", "101", "107", "111", "114", "116"), class = "factor"),
LOC2a = structure(c(4L, 4L, 4L, 4L, 4L, 4L, 5L, 4L, 5L, 6L,
9L, 5L, 5L, 9L, 9L, 5L, 5L, 5L, 6L, 4L, 4L, 5L, 3L, 3L, 3L,
2L, 5L, 5L, 1L, 8L, 8L, 8L, 5L, 4L, 4L, 3L, 3L, 4L, 5L, 1L,
5L, 5L, 8L, 8L, 5L, 5L, 4L, 1L, 4L, 5L, 8L, 7L, 7L, 4L, 1L,
5L, 5L, 5L, 9L, 4L, 6L, 5L, 5L, 4L, 4L, 5L, 5L, 5L, 4L, 4L,
5L, 6L, 6L, 6L, 4L, 4L, 4L, 6L, 6L, 3L, 8L, 1L, 2L, 4L, 2L,
2L, 5L, 5L, 5L, 4L, 8L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 8L, 3L,
3L, 3L, 1L, 6L, 5L, 3L, 3L, 3L, 5L, 5L, 1L, 3L, 4L, 4L, 8L,
8L, 8L, 5L, 4L, 5L, 5L, 5L, 9L, 5L, 5L, 5L, 2L, 2L, 2L, 2L,
3L, 6L, 3L, 3L, 3L, 8L, 9L, 2L, 5L, 5L, 5L, 4L, 8L, 4L, 4L,
5L, 3L, 5L), levels = c("-99", "201", "202", "203", "211",
"212", "213", "214", "216"), class = "factor"), LOC2b = structure(c(8L,
4L, 4L, 3L, 3L, 3L, 4L, 4L, 5L, 8L, 9L, 7L, 7L, 9L, 9L, 4L,
4L, 4L, 8L, 4L, 4L, 8L, 9L, 8L, 8L, 8L, 8L, 8L, 1L, 7L, 9L,
9L, 8L, 9L, 9L, 4L, 5L, 3L, 6L, 1L, 9L, 9L, 9L, 9L, 8L, 8L,
3L, 1L, 4L, 4L, 8L, 8L, 8L, 4L, 1L, 7L, 7L, 7L, 8L, 8L, 8L,
8L, 8L, 4L, 4L, 4L, 4L, 4L, 9L, 9L, 4L, 7L, 7L, 9L, 5L, 5L,
5L, 8L, 8L, 7L, 8L, 1L, 7L, 8L, 3L, 3L, 4L, 4L, 5L, 9L, 8L,
4L, 4L, 4L, 4L, 4L, 4L, 3L, 8L, 4L, 4L, 4L, 1L, 7L, 8L, 7L,
2L, 7L, 7L, 7L, 1L, 7L, 4L, 3L, 8L, 8L, 7L, 4L, 4L, 5L, 4L,
4L, 9L, 4L, 8L, 5L, 5L, 4L, 4L, 4L, 4L, 8L, 2L, 8L, 8L, 8L,
8L, 4L, 4L, 4L, 4L, 5L, 9L, 5L, 5L, 9L, 4L, 9L), levels = c("-99",
"202", "203", "211", "212", "213", "214", "216", "219"), class = "factor"),
LOC3a = structure(c(3L, 3L, 3L, 3L, 3L, 3L, 5L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 6L, 6L, 5L, 3L, 9L, 3L, 3L, 3L, 3L, 3L,
1L, 8L, 3L, 5L, 3L, 3L, 3L, 1L, 2L, 2L, 3L, 3L, 7L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 5L, 7L, 3L, 6L, 6L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 7L, 7L, 7L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 7L,
7L, 3L, 3L, 3L, 3L, 6L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 3L,
3L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 6L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 1L, 3L, 3L, 3L, 3L, 4L, 3L, 3L, 5L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 3L, 3L, 3L, 9L, 3L, 3L,
6L, 3L, 4L), levels = c("-99", "301", "305", "306", "308",
"314", "315", "316", "320"), class = "factor"), LOC3b = structure(c(6L,
2L, 2L, 3L, 3L, 2L, 8L, 6L, 2L, 2L, 8L, 2L, 5L, 6L, 6L, 7L,
7L, 5L, 7L, 8L, 3L, 6L, 2L, 2L, 2L, 1L, 8L, 7L, 8L, 2L, 2L,
2L, 1L, 8L, 8L, 2L, 5L, 6L, 6L, 6L, 2L, 2L, 8L, 8L, 6L, 2L,
8L, 2L, 5L, 7L, 2L, 6L, 6L, 2L, 2L, 6L, 2L, 2L, 4L, 2L, 8L,
7L, 7L, 2L, 2L, 1L, 1L, 8L, 2L, 2L, 6L, 8L, 8L, 2L, 8L, 8L,
8L, 6L, 6L, 8L, 5L, 5L, 8L, 5L, 7L, 7L, 6L, 6L, 2L, 5L, 8L,
5L, 5L, 5L, 5L, 6L, 6L, 5L, 2L, 2L, 2L, 1L, 5L, 5L, 5L, 2L,
2L, 2L, 1L, 8L, 5L, 5L, 2L, 8L, 5L, 5L, 5L, 1L, 2L, 3L, 2L,
2L, 5L, 2L, 8L, 8L, 6L, 2L, 2L, 2L, 4L, 2L, 2L, 2L, 2L, 3L,
5L, 6L, 2L, 2L, 2L, 2L, 8L, 2L, 2L, 5L, 5L, 3L), levels = c("-99",
"305", "306", "308", "314", "315", "316", "320"), class = "factor"),
LOC4a = structure(c(2L, 5L, 5L, 2L, 2L, 2L, 3L, 2L, 3L, 2L,
2L, 5L, 5L, 1L, 5L, 1L, 3L, 3L, 2L, 5L, 2L, 6L, 2L, 3L, 3L,
5L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L, 6L, 2L, 2L,
5L, 1L, 2L, 2L, 6L, 6L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L,
3L, 3L, 1L, 5L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
5L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L,
2L, 5L, 5L, 5L, 2L, 6L, 3L, 3L, 3L, 3L, 5L, 5L, 2L, 6L, 4L,
4L, 2L, 6L, 6L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 2L, 1L, 2L, 2L,
2L, 1L, 3L, 5L, 2L, 3L, 3L, 2L, 3L, 3L, 5L, 3L, 3L, 3L, 3L,
4L, 5L, 2L, 2L, 2L, 2L, 2L, 5L, 2L, 2L, 2L, 6L, 4L, 2L, 1L,
2L, 3L, 2L), levels = c("-99", "402", "403", "406", "411",
"412"), class = "factor"), LOC4b = structure(c(5L, 8L, 5L,
8L, 8L, 8L, 5L, 6L, 5L, 5L, 3L, 8L, 8L, 1L, 8L, 1L, 5L, 5L,
2L, 8L, 5L, 6L, 2L, 7L, 7L, 9L, 6L, 8L, 9L, 6L, 6L, 6L, 6L,
4L, 4L, 5L, 6L, 7L, 5L, 5L, 5L, 1L, 3L, 3L, 6L, 6L, 7L, 7L,
6L, 5L, 5L, 6L, 6L, 3L, 6L, 6L, 8L, 1L, 6L, 6L, 5L, 6L, 6L,
6L, 6L, 7L, 7L, 7L, 6L, 6L, 6L, 5L, 5L, 5L, 6L, 6L, 6L, 2L,
3L, 5L, 2L, 3L, 6L, 3L, 2L, 2L, 5L, 5L, 9L, 2L, 8L, 4L, 4L,
4L, 4L, 8L, 8L, 3L, 6L, 6L, 6L, 5L, 6L, 6L, 6L, 6L, 6L, 6L,
6L, 6L, 7L, 7L, 1L, 6L, 2L, 2L, 1L, 6L, 5L, 3L, 3L, 3L, 2L,
5L, 3L, 8L, 9L, 4L, 4L, 4L, 6L, 8L, 3L, 3L, 3L, 7L, 8L, 8L,
3L, 3L, 3L, 6L, 7L, 6L, 1L, 3L, 6L, 5L), levels = c("-99",
"402", "403", "406", "411", "412", "415", "416", "417"), class = "factor"),
LOC5a = structure(c(5L, 2L, 2L, 7L, 7L, 7L, 6L, 6L, 2L, 2L,
3L, 2L, 2L, 5L, 5L, 2L, 2L, 5L, 2L, 2L, 2L, 2L, 4L, 4L, 4L,
4L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 3L, 2L, 3L, 2L, 2L,
2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L,
4L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 2L, 1L, 2L, 2L, 2L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 3L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 2L,
2L, 5L, 3L, 3L, 5L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L,
2L, 2L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 2L,
3L, 4L, 1L), levels = c("-99", "501", "505", "512", "514",
"515", "520"), class = "factor"), LOC5b = structure(c(5L,
4L, 4L, 7L, 7L, 7L, 7L, 7L, 2L, 5L, 6L, 3L, 3L, 5L, 5L, 5L,
5L, 5L, 7L, 7L, 3L, 3L, 4L, 5L, 5L, 7L, 7L, 7L, 3L, 3L, 3L,
2L, 7L, 5L, 5L, 5L, 3L, 5L, 4L, 4L, 6L, 6L, 7L, 1L, 5L, 5L,
7L, 7L, 3L, 2L, 2L, 4L, 4L, 2L, 3L, 6L, 1L, 2L, 5L, 5L, 7L,
7L, 7L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 7L, 5L, 1L, 3L, 4L, 4L,
4L, 6L, 6L, 6L, 5L, 5L, 5L, 5L, 2L, 2L, 2L, 2L, 7L, 7L, 2L,
3L, 3L, 3L, 3L, 6L, 3L, 3L, 2L, 2L, 2L, 6L, 4L, 3L, 7L, 3L,
3L, 3L, 3L, 3L, 4L, 4L, 1L, 7L, 7L, 7L, 7L, 6L, 3L, 7L, 2L,
2L, 2L, 5L, 7L, 6L, 2L, 5L, 5L, 5L, 6L, 2L, 5L, 5L, 1L, 2L,
3L, 2L, 7L, 7L, 7L, 2L, 5L, 6L, 2L, 4L, 7L, 1L), levels = c("-99",
"501", "505", "512", "514", "515", "520"), class = "factor"),
LOC6a = structure(c(9L, 10L, 10L, 6L, 6L, 6L, 3L, 2L, 2L,
2L, 4L, 2L, 2L, 4L, 4L, 4L, 4L, 2L, 7L, 4L, 2L, 3L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 3L, 2L, 2L, 4L, 2L, 2L, 2L,
2L, 5L, 1L, 2L, 2L, 2L, 2L, 8L, 8L, 2L, 3L, 2L, 2L, 2L, 3L,
2L, 3L, 2L, 2L, 1L, 4L, 2L, 4L, 4L, 1L, 10L, 4L, 4L, 4L,
4L, 4L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 4L, 4L, 2L, 2L, 2L, 2L,
4L, 4L, 4L, 2L, 2L, 2L, 4L, 3L, 2L, 2L, 2L, 2L, 10L, 10L,
3L, 7L, 4L, 4L, 1L, 2L, 2L, 7L, 4L, 4L, 4L, 2L, 2L, 2L, 2L,
2L, 4L, 3L, 1L, 3L, 3L, 4L, 8L, 1L, 6L, 2L, 2L, 2L, 3L, 2L,
2L, 2L, 2L, 2L, 7L, 4L, 4L, 4L, 2L, 3L, 2L, 4L, 4L, 4L, 5L,
2L, 3L, 3L, 4L, 2L, 2L), levels = c("-99", "601", "604",
"607", "608", "610", "615", "616", "619", "620"), class = "factor"),
LOC6b = structure(c(11L, 11L, 11L, 11L, 11L, 6L, 3L, 3L,
8L, 4L, 4L, 9L, 9L, 4L, 4L, 4L, 4L, 2L, 11L, 9L, 10L, 4L,
11L, 4L, 4L, 9L, 4L, 11L, 4L, 8L, 8L, 8L, 11L, 11L, 11L,
4L, 10L, 11L, 11L, 11L, 10L, 1L, 2L, 2L, 2L, 11L, 10L, 10L,
4L, 4L, 4L, 9L, 9L, 11L, 5L, 11L, 4L, 4L, 1L, 10L, 4L, 4L,
5L, 1L, 11L, 11L, 11L, 11L, 11L, 11L, 1L, 2L, 2L, 4L, 2L,
2L, 2L, 4L, 4L, 11L, 4L, 4L, 11L, 4L, 11L, 11L, 9L, 9L, 8L,
4L, 10L, 4L, 4L, 4L, 4L, 11L, 11L, 3L, 10L, 11L, 11L, 1L,
2L, 2L, 9L, 10L, 10L, 10L, 10L, 10L, 7L, 7L, 8L, 4L, 9L,
1L, 9L, 7L, 11L, 10L, 1L, 8L, 11L, 11L, 2L, 4L, 4L, 2L, 2L,
2L, 3L, 8L, 9L, 9L, 9L, 5L, 4L, 4L, 10L, 10L, 4L, 10L, 2L,
5L, 5L, 7L, 4L, 4L), levels = c("-99", "601", "604", "607",
"608", "610", "615", "616", "617", "619", "620"), class = "factor"),
LOC7a = structure(c(4L, 3L, 3L, 7L, 7L, 7L, 3L, 2L, 5L, 3L,
5L, 7L, 7L, 7L, 7L, 8L, 8L, 5L, 3L, 5L, 5L, 4L, 4L, 4L, 4L,
4L, 5L, 3L, 7L, 5L, 5L, 5L, 5L, 5L, 5L, 7L, 1L, 3L, 4L, 4L,
4L, 4L, 7L, 7L, 7L, 7L, 6L, 6L, 3L, 4L, 5L, 4L, 4L, 3L, 7L,
5L, 4L, 4L, 3L, 4L, 7L, 7L, 7L, 4L, 4L, 7L, 7L, 7L, 7L, 7L,
5L, 4L, 4L, 3L, 4L, 4L, 4L, 1L, 2L, 5L, 5L, 5L, 2L, 5L, 3L,
1L, 5L, 5L, 5L, 3L, 1L, 8L, 8L, 8L, 8L, 3L, 3L, 4L, 3L, 3L,
3L, 7L, 3L, 3L, 1L, 1L, 1L, 4L, 7L, 7L, 5L, 5L, 4L, 7L, 3L,
3L, 3L, 7L, 3L, 5L, 4L, 4L, 4L, 4L, 7L, 3L, 5L, 7L, 7L, 7L,
3L, 3L, 5L, 5L, 5L, 5L, 5L, 9L, 4L, 4L, 4L, 4L, 5L, 2L, 2L,
3L, 5L, 5L), levels = c("-99", "701", "705", "706", "707",
"709", "711", "713", "714"), class = "factor"), LOC7b = structure(c(5L,
5L, 5L, 5L, 5L, 5L, 8L, 4L, 6L, 5L, 5L, 5L, 5L, 6L, 6L, 8L,
8L, 4L, 4L, 5L, 8L, 5L, 4L, 5L, 5L, 5L, 5L, 5L, 8L, 4L, 6L,
4L, 5L, 5L, 4L, 6L, 1L, 5L, 4L, 4L, 5L, 5L, 5L, 5L, 8L, 8L,
5L, 5L, 4L, 5L, 6L, 4L, 4L, 4L, 7L, 5L, 4L, 4L, 5L, 4L, 5L,
8L, 8L, 4L, 4L, 5L, 5L, 5L, 6L, 6L, 5L, 4L, 4L, 5L, 6L, 6L,
6L, 1L, 4L, 4L, 4L, 4L, 2L, 4L, 5L, 1L, 5L, 5L, 4L, 5L, 1L,
7L, 7L, 7L, 7L, 4L, 4L, 3L, 4L, 4L, 4L, 6L, 2L, 2L, 1L, 1L,
1L, 4L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 2L, 5L, 5L, 3L, 4L, 6L,
6L, 4L, 5L, 8L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L,
5L, 8L, 6L, 6L, 6L, 5L, 5L, 3L, 3L, 5L, 5L, 5L), levels = c("-99",
"705", "706", "707", "711", "713", "714", "718"), class = "factor"),
LOC8a = structure(c(7L, 4L, 4L, 4L, 4L, 4L, 3L, 3L, 4L, 4L,
3L, 7L, 7L, 3L, 3L, 3L, 3L, 3L, 7L, 4L, 8L, 5L, 6L, 6L, 1L,
4L, 5L, 6L, 4L, 3L, 3L, 3L, 7L, 6L, 6L, 8L, 3L, 9L, 6L, 6L,
3L, 3L, 6L, 6L, 9L, 9L, 5L, 5L, 4L, 3L, 4L, 6L, 6L, 3L, 4L,
7L, 5L, 5L, 1L, 3L, 9L, 3L, 3L, 7L, 7L, 9L, 9L, 9L, 3L, 3L,
4L, 1L, 4L, 4L, 3L, 3L, 3L, 4L, 4L, 3L, 9L, 9L, 9L, 4L, 1L,
4L, 8L, 8L, 3L, 4L, 4L, 7L, 7L, 7L, 7L, 6L, 6L, 6L, 6L, 7L,
7L, 9L, 4L, 4L, 8L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 3L, 4L, 8L,
8L, 1L, 4L, 6L, 5L, 9L, 9L, 7L, 4L, 3L, 6L, 4L, 5L, 5L, 5L,
7L, 7L, 4L, 1L, 4L, 3L, 5L, 2L, 8L, 8L, 8L, 6L, 6L, 6L, 6L,
1L, 4L, 7L), levels = c("-99", "802", "807", "808", "813",
"815", "816", "819", "820"), class = "factor"), LOC8b = structure(c(8L,
5L, 5L, 6L, 6L, 6L, 6L, 5L, 6L, 5L, 3L, 7L, 7L, 3L, 3L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 8L, 5L, 1L, 8L, 6L, 6L, 7L, 3L, 3L,
3L, 7L, 7L, 7L, 8L, 6L, 8L, 5L, 5L, 3L, 3L, 7L, 7L, 8L, 8L,
8L, 8L, 5L, 8L, 3L, 7L, 7L, 5L, 7L, 8L, 8L, 8L, 1L, 7L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 8L, 3L, 3L, 7L, 1L, 8L, 6L, 3L, 3L,
3L, 5L, 5L, 2L, 8L, 8L, 8L, 3L, 1L, 6L, 8L, 8L, 7L, 5L, 4L,
8L, 6L, 8L, 8L, 5L, 5L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 6L,
6L, 6L, 8L, 8L, 3L, 6L, 2L, 5L, 7L, 7L, 1L, 5L, 5L, 8L, 8L,
8L, 8L, 5L, 3L, 5L, 7L, 5L, 5L, 5L, 6L, 7L, 6L, 1L, 6L, 7L,
6L, 8L, 8L, 8L, 8L, 8L, 8L, 6L, 6L, 1L, 6L, 8L), levels = c("-99",
"807", "808", "813", "815", "816", "819", "820"), class = "factor"),
LOC9a = structure(c(1L, 6L, 6L, 3L, 3L, 3L, 3L, 3L, 5L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 2L, 2L,
3L, 3L, 4L, 4L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 3L, 3L, 3L,
3L, 3L, 5L, 5L, 3L, 3L, 3L, 3L, 3L, 3L, 5L, 3L, 3L, 5L, 3L,
3L, 5L, 5L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 4L, 4L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 3L,
3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 4L, 4L, 2L, 3L, 5L,
5L, 5L, 3L, 5L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L, 3L, 3L, 3L,
3L, 4L, 2L, 2L, 2L, 4L, 3L, 2L, 3L, 3L, 3L, 3L, 5L, 3L, 3L,
3L, 3L, 5L), levels = c("-99", "901", "906", "916", "917",
"919"), class = "factor"), LOC9b = structure(c(1L, 6L, 6L,
4L, 4L, 4L, 4L, 6L, 5L, 6L, 5L, 4L, 4L, 4L, 4L, 3L, 5L, 3L,
5L, 3L, 3L, 6L, 1L, 2L, 2L, 3L, 3L, 6L, 6L, 3L, 3L, 3L, 4L,
6L, 6L, 3L, 4L, 3L, 6L, 6L, 3L, 3L, 6L, 6L, 4L, 4L, 3L, 3L,
3L, 4L, 5L, 4L, 4L, 6L, 3L, 4L, 5L, 5L, 4L, 4L, 3L, 3L, 3L,
4L, 4L, 5L, 5L, 5L, 3L, 3L, 4L, 3L, 3L, 3L, 3L, 1L, 1L, 6L,
6L, 3L, 6L, 6L, 6L, 3L, 3L, 3L, 6L, 6L, 4L, 1L, 1L, 3L, 3L,
3L, 3L, 6L, 3L, 5L, 1L, 6L, 6L, 3L, 3L, 3L, 4L, 2L, 2L, 2L,
4L, 4L, 5L, 5L, 2L, 3L, 5L, 5L, 5L, 4L, 6L, 5L, 3L, 2L, 5L,
6L, 4L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 4L, 4L, 4L, 5L, 6L, 3L,
3L, 3L, 3L, 3L, 6L, 4L, 4L, 4L, 3L, 6L), levels = c("-99",
"901", "906", "916", "917", "919"), class = "factor"), LOC10a = structure(c(8L,
9L, 9L, 2L, 2L, 2L, 2L, 2L, 9L, 4L, 2L, 2L, 2L, 4L, 4L, 7L,
7L, 2L, 2L, 2L, 2L, 4L, 2L, 5L, 5L, 10L, 8L, 10L, 2L, 6L,
6L, 6L, 6L, 2L, 2L, 2L, 4L, 6L, 4L, 4L, 2L, 2L, 6L, 6L, 2L,
2L, 9L, 9L, 1L, 2L, 9L, 5L, 5L, 6L, 4L, 2L, 1L, 1L, 4L, 2L,
2L, 2L, 2L, 8L, 8L, 9L, 9L, 9L, 9L, 9L, 2L, 6L, 6L, 9L, 10L,
10L, 10L, 4L, 4L, 6L, 2L, 2L, 4L, 4L, 8L, 8L, 2L, 1L, 1L,
12L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 2L, 2L, 2L, 2L, 6L, 4L,
4L, 2L, 11L, 11L, 11L, 2L, 2L, 3L, 3L, 6L, 10L, 5L, 1L, 5L,
2L, 12L, 2L, 3L, 3L, 6L, 2L, 2L, 2L, 4L, 6L, 6L, 6L, 6L,
2L, 2L, 2L, 2L, 2L, 1L, 2L, 8L, 8L, 8L, 4L, 6L, 2L, 2L, 2L,
2L, 2L), levels = c("-99", "1002", "1003", "1004", "1005",
"1009", "1010", "1012", "1014", "1016", "1018", "1020"), class = "factor"),
LOC10b = structure(c(12L, 12L, 12L, 9L, 9L, 9L, 2L, 12L,
10L, 4L, 2L, 10L, 2L, 9L, 9L, 9L, 9L, 4L, 5L, 6L, 10L, 10L,
6L, 10L, 10L, 10L, 10L, 10L, 12L, 6L, 9L, 9L, 10L, 6L, 6L,
6L, 10L, 10L, 4L, 6L, 12L, 12L, 12L, 12L, 4L, 4L, 11L, 11L,
1L, 5L, 10L, 12L, 12L, 10L, 10L, 2L, 1L, 1L, 12L, 4L, 2L,
12L, 12L, 10L, 10L, 10L, 10L, 10L, 9L, 9L, 12L, 11L, 11L,
10L, 12L, 12L, 12L, 6L, 6L, 6L, 10L, 10L, 8L, 8L, 9L, 9L,
10L, 1L, 1L, 12L, 11L, 10L, 10L, 10L, 10L, 6L, 6L, 2L, 5L,
12L, 12L, 9L, 12L, 12L, 4L, 12L, 12L, 12L, 8L, 8L, 12L, 3L,
6L, 12L, 7L, 1L, 7L, 2L, 12L, 6L, 12L, 12L, 10L, 12L, 10L,
10L, 10L, 10L, 10L, 10L, 12L, 5L, 10L, 10L, 10L, 3L, 1L,
10L, 10L, 10L, 10L, 11L, 12L, 4L, 4L, 8L, 2L, 8L), levels = c("-99",
"1002", "1003", "1004", "1005", "1009", "1010", "1012", "1014",
"1016", "1018", "1020"), class = "factor")), row.names = c(NA,
-148L), class = "data.frame")
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amExample2 <-
structure(list(sampleId = structure(c(1L, 62L, 73L, 84L, 95L,
106L, 117L, 128L, 138L, 2L, 12L, 23L, 34L, 44L, 55L, 58L, 59L,
60L, 61L, 63L, 64L, 65L, 66L, 67L, 68L, 69L, 70L, 71L, 72L, 74L,
75L, 76L, 77L, 78L, 79L, 80L, 81L, 82L, 83L, 85L, 86L, 87L, 88L,
89L, 90L, 91L, 92L, 93L, 94L, 96L, 97L, 98L, 99L, 100L, 101L,
102L, 103L, 104L, 105L, 107L, 108L, 109L, 110L, 111L, 112L, 113L,
114L, 115L, 116L, 118L, 119L, 120L, 121L, 122L, 123L, 124L, 125L,
126L, 127L, 129L, 130L, 131L, 132L, 133L, 134L, 135L, 136L, 137L,
139L, 140L, 141L, 142L, 143L, 144L, 145L, 146L, 147L, 148L, 3L,
4L, 5L, 6L, 7L, 8L, 9L, 10L, 11L, 13L, 14L, 15L, 16L, 17L, 18L,
19L, 20L, 21L, 22L, 24L, 25L, 26L, 27L, 28L, 29L, 30L, 31L, 32L,
33L, 35L, 36L, 37L, 38L, 39L, 40L, 41L, 42L, 43L, 45L, 46L, 47L,
48L, 49L, 50L, 51L, 52L, 53L, 54L, 56L, 57L), levels = c("1",
"10", "100", "101", "102", "103", "105", "106", "107", "108",
"109", "11", "110", "111", "112", "113", "114", "115", "116",
"117", "118", "119", "12", "120", "121", "122", "123", "124",
"125", "126", "127", "128", "129", "13", "130", "131", "132",
"134", "135", "136", "137", "138", "139", "14", "140", "141",
"142", "143", "144", "145", "146", "147", "148", "149", "15",
"150", "151", "16", "17", "18", "19", "2", "20", "21", "22",
"23", "24", "25", "26", "27", "28", "29", "3", "30", "31", "32",
"33", "34", "35", "36", "37", "38", "39", "4", "40", "41", "42",
"43", "44", "45", "46", "47", "48", "49", "5", "50", "51", "52",
"53", "54", "55", "56", "57", "58", "59", "6", "60", "61", "62",
"63", "64", "65", "66", "67", "68", "69", "7", "70", "71", "72",
"73", "74", "75", "76", "77", "78", "79", "8", "80", "81", "82",
"83", "85", "86", "87", "88", "89", "9", "90", "91", "92", "93",
"94", "95", "96", "97", "98", "99"), class = "factor"), knownIndividual = structure(c(1L,
2L, 2L, 3L, 3L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 9L, 10L, 10L, 11L,
11L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 18L, 19L, 20L, 21L, 22L,
23L, 23L, 23L, 24L, 25L, 25L, 26L, 27L, 28L, 29L, 29L, 30L, 30L,
31L, 31L, 32L, 32L, 33L, 33L, 34L, 35L, 36L, 37L, 37L, 38L, 39L,
40L, 41L, 41L, 42L, 43L, 44L, 45L, 45L, 46L, 46L, 47L, 47L, 47L,
48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 52L, 53L, 53L, 54L, 55L,
55L, 56L, 57L, 58L, 58L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L,
63L, 64L, 64L, 65L, 66L, 67L, 67L, 68L, 69L, 69L, 70L, 71L, 71L,
71L, 72L, 72L, 73L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 78L, 79L,
80L, 80L, 81L, 82L, 83L, 84L, 85L, 86L, 86L, 86L, 87L, 88L, 89L,
89L, 89L, 90L, 91L, 92L, 93L, 93L, 93L, 94L, 95L, 96L, 96L, 97L,
98L, 99L), levels = c("AAA", "AAB", "AAC", "AAD", "AAE", "AAF",
"AAG", "AAH", "AAI", "AAJ", "AAK", "AAL", "AAM", "AAN", "AAO",
"AAP", "AAQ", "AAR", "AAS", "AAT", "AAU", "AAV", "AAW", "AAX",
"AAY", "AAZ", "ABA", "ABB", "ABC", "ABD", "ABE", "ABF", "ABG",
"ABH", "ABI", "ABJ", "ABK", "ABL", "ABM", "ABN", "ABO", "ABP",
"ABQ", "ABR", "ABS", "ABT", "ABU", "ABV", "ABW", "ABX", "ABY",
"ABZ", "ACA", "ACB", "ACC", "ACD", "ACE", "ACF", "ACG", "ACH",
"ACI", "ACJ", "ACK", "ACL", "ACM", "ACN", "ACO", "ACP", "ACQ",
"ACR", "ACS", "ACT", "ACU", "ACV", "ACW", "ACX", "ACY", "ACZ",
"ADA", "ADB", "ADC", "ADD", "ADE", "ADF", "ADG", "ADH", "ADJ",
"ADK", "ADL", "ADM", "ADN", "ADO", "ADP", "ADQ", "ADR", "ADS",
"ADT", "ADU", "ADV"), class = "factor"), LOC1a = structure(c(2L,
2L, 2L, 5L, 5L, 5L, 3L, 2L, 5L, 4L, 2L, 4L, 4L, 4L, 4L, 2L, 2L,
4L, 5L, 5L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 5L, 2L, 2L, 2L, 4L,
2L, 2L, 4L, 2L, 5L, 2L, 2L, 5L, 5L, 5L, 5L, 1L, 3L, 7L, 7L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 2L, 4L, 2L, 2L, 7L, 7L,
4L, 4L, 4L, 2L, 2L, 2L, 2L, 2L, 7L, 2L, 2L, 1L, 4L, 4L, 2L, 2L,
2L, 4L, 4L, 2L, 2L, 2L, 2L, 7L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
5L, 2L, 2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 4L, 4L, 4L, 1L, 6L, 2L,
2L, 4L, 4L, 4L, 2L, 2L, 2L, 4L, 4L, 2L, 4L, 1L, 2L, 2L, 5L, 1L,
5L, 4L, 2L, 4L, 4L, 4L, 4L, 4L, 2L, 4L, 4L, 4L, 4L, 2L, 4L, 4L,
4L, 4L, 1L), levels = c("-99", "101", "102", "107", "111", "114",
"116"), class = "factor"), LOC1b = structure(c(6L, 6L, 6L, 6L,
6L, 6L, 6L, 6L, 6L, 6L, 3L, 6L, 6L, 4L, 4L, 2L, 2L, 3L, 4L, 6L,
4L, 3L, 4L, 4L, 4L, 6L, 6L, 2L, 6L, 2L, 2L, 2L, 6L, 4L, 4L, 6L,
6L, 6L, 6L, 6L, 6L, 6L, 4L, 4L, 1L, 6L, 6L, 6L, 4L, 2L, 4L, 3L,
3L, 3L, 6L, 6L, 6L, 6L, 6L, 3L, 3L, 4L, 4L, 6L, 6L, 4L, 4L, 4L,
2L, 2L, 2L, 3L, 2L, 6L, 4L, 4L, 1L, 4L, 4L, 6L, 4L, 4L, 6L, 4L,
6L, 6L, 2L, 6L, 6L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 6L, 6L, 6L, 6L,
6L, 6L, 6L, 6L, 3L, 6L, 6L, 6L, 6L, 6L, 1L, 5L, 3L, 3L, 6L, 6L,
6L, 6L, 2L, 4L, 3L, 3L, 4L, 6L, 1L, 2L, 6L, 6L, 1L, 6L, 6L, 2L,
6L, 6L, 6L, 4L, 4L, 4L, 3L, 3L, 3L, 6L, 3L, 6L, 6L, 3L, 4L, 1L
), levels = c("-99", "101", "107", "111", "114", "116"), class = "factor"),
LOC2a = structure(c(4L, 4L, 4L, 4L, 4L, 4L, 5L, 4L, 5L, 6L,
9L, 5L, 5L, 9L, 9L, 5L, 5L, 5L, 6L, 4L, 4L, 5L, 3L, 3L, 3L,
2L, 5L, 5L, 1L, 8L, 8L, 8L, 5L, 4L, 4L, 3L, 3L, 4L, 5L, 1L,
5L, 5L, 8L, 8L, 5L, 5L, 4L, 1L, 4L, 5L, 8L, 7L, 7L, 4L, 1L,
5L, 5L, 5L, 9L, 4L, 6L, 5L, 5L, 4L, 4L, 5L, 5L, 5L, 4L, 4L,
5L, 6L, 6L, 6L, 4L, 4L, 4L, 6L, 6L, 3L, 8L, 1L, 2L, 4L, 2L,
2L, 5L, 5L, 5L, 4L, 8L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 8L, 3L,
3L, 3L, 1L, 6L, 5L, 3L, 3L, 3L, 5L, 5L, 1L, 3L, 4L, 4L, 8L,
8L, 8L, 5L, 4L, 5L, 5L, 5L, 9L, 5L, 5L, 5L, 2L, 2L, 2L, 2L,
3L, 6L, 3L, 3L, 3L, 8L, 9L, 2L, 5L, 5L, 5L, 4L, 8L, 4L, 4L,
5L, 3L, 5L), levels = c("-99", "201", "202", "203", "211",
"212", "213", "214", "216"), class = "factor"), LOC2b = structure(c(8L,
4L, 4L, 3L, 3L, 3L, 4L, 4L, 5L, 8L, 9L, 7L, 7L, 9L, 9L, 4L,
4L, 4L, 8L, 4L, 4L, 8L, 9L, 8L, 8L, 8L, 8L, 8L, 1L, 7L, 9L,
9L, 8L, 9L, 9L, 4L, 5L, 3L, 6L, 1L, 9L, 9L, 9L, 9L, 8L, 8L,
3L, 1L, 4L, 4L, 8L, 8L, 8L, 4L, 1L, 7L, 7L, 7L, 8L, 8L, 8L,
8L, 8L, 4L, 4L, 4L, 4L, 4L, 9L, 9L, 4L, 7L, 7L, 9L, 5L, 5L,
5L, 8L, 8L, 7L, 8L, 1L, 7L, 8L, 3L, 3L, 4L, 4L, 5L, 9L, 8L,
4L, 4L, 4L, 4L, 4L, 4L, 3L, 8L, 4L, 4L, 4L, 1L, 7L, 8L, 7L,
2L, 7L, 7L, 7L, 1L, 7L, 4L, 3L, 8L, 8L, 7L, 4L, 4L, 5L, 4L,
4L, 9L, 4L, 8L, 5L, 5L, 4L, 4L, 4L, 4L, 8L, 2L, 8L, 8L, 8L,
8L, 4L, 4L, 4L, 4L, 5L, 9L, 5L, 5L, 9L, 4L, 9L), levels = c("-99",
"202", "203", "211", "212", "213", "214", "216", "219"), class = "factor"),
LOC3a = structure(c(3L, 3L, 3L, 3L, 3L, 3L, 5L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 6L, 6L, 5L, 3L, 9L, 3L, 3L, 3L, 3L, 3L,
1L, 8L, 3L, 5L, 3L, 3L, 3L, 1L, 2L, 2L, 3L, 3L, 7L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 5L, 7L, 3L, 6L, 6L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 7L, 7L, 7L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 7L,
7L, 3L, 3L, 3L, 3L, 6L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 3L,
3L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 6L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 1L, 3L, 3L, 3L, 3L, 4L, 3L, 3L, 5L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 3L, 3L, 3L, 3L, 9L, 3L, 3L,
6L, 3L, 4L), levels = c("-99", "301", "305", "306", "308",
"314", "315", "316", "320"), class = "factor"), LOC3b = structure(c(6L,
2L, 2L, 3L, 3L, 2L, 8L, 6L, 2L, 2L, 8L, 2L, 5L, 6L, 6L, 7L,
7L, 5L, 7L, 8L, 3L, 6L, 2L, 2L, 2L, 1L, 8L, 7L, 8L, 2L, 2L,
2L, 1L, 8L, 8L, 2L, 5L, 6L, 6L, 6L, 2L, 2L, 8L, 8L, 6L, 2L,
8L, 2L, 5L, 7L, 2L, 6L, 6L, 2L, 2L, 6L, 2L, 2L, 4L, 2L, 8L,
7L, 7L, 2L, 2L, 1L, 1L, 8L, 2L, 2L, 6L, 8L, 8L, 2L, 8L, 8L,
8L, 6L, 6L, 8L, 5L, 5L, 8L, 5L, 7L, 7L, 6L, 6L, 2L, 5L, 8L,
5L, 5L, 5L, 5L, 6L, 6L, 5L, 2L, 2L, 2L, 1L, 5L, 5L, 5L, 2L,
2L, 2L, 1L, 8L, 5L, 5L, 2L, 8L, 5L, 5L, 5L, 1L, 2L, 3L, 2L,
2L, 5L, 2L, 8L, 8L, 6L, 2L, 2L, 2L, 4L, 2L, 2L, 2L, 2L, 3L,
5L, 6L, 2L, 2L, 2L, 2L, 8L, 2L, 2L, 5L, 5L, 3L), levels = c("-99",
"305", "306", "308", "314", "315", "316", "320"), class = "factor"),
LOC4a = structure(c(2L, 5L, 5L, 2L, 2L, 2L, 3L, 2L, 3L, 2L,
2L, 5L, 5L, 1L, 5L, 1L, 3L, 3L, 2L, 5L, 2L, 6L, 2L, 3L, 3L,
5L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L, 6L, 2L, 2L,
5L, 1L, 2L, 2L, 6L, 6L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L,
3L, 3L, 1L, 5L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
5L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L,
2L, 5L, 5L, 5L, 2L, 6L, 3L, 3L, 3L, 3L, 5L, 5L, 2L, 6L, 4L,
4L, 2L, 6L, 6L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 2L, 1L, 2L, 2L,
2L, 1L, 3L, 5L, 2L, 3L, 3L, 2L, 3L, 3L, 5L, 3L, 3L, 3L, 3L,
4L, 5L, 2L, 2L, 2L, 2L, 2L, 5L, 2L, 2L, 2L, 6L, 4L, 2L, 1L,
2L, 3L, 2L), levels = c("-99", "402", "403", "406", "411",
"412"), class = "factor"), LOC4b = structure(c(5L, 8L, 5L,
8L, 8L, 8L, 5L, 6L, 5L, 5L, 3L, 8L, 8L, 1L, 8L, 1L, 5L, 5L,
2L, 8L, 5L, 6L, 2L, 7L, 7L, 9L, 6L, 8L, 9L, 6L, 6L, 6L, 6L,
4L, 4L, 5L, 6L, 7L, 5L, 5L, 5L, 1L, 3L, 3L, 6L, 6L, 7L, 7L,
6L, 5L, 5L, 6L, 6L, 3L, 6L, 6L, 8L, 1L, 6L, 6L, 5L, 6L, 6L,
6L, 6L, 7L, 7L, 7L, 6L, 6L, 6L, 5L, 5L, 5L, 6L, 6L, 6L, 2L,
3L, 5L, 2L, 3L, 6L, 3L, 2L, 2L, 5L, 5L, 9L, 2L, 8L, 4L, 4L,
4L, 4L, 8L, 8L, 3L, 6L, 6L, 6L, 5L, 6L, 6L, 6L, 6L, 6L, 6L,
6L, 6L, 7L, 7L, 1L, 6L, 2L, 2L, 1L, 6L, 5L, 3L, 3L, 3L, 2L,
5L, 3L, 8L, 9L, 4L, 4L, 4L, 6L, 8L, 3L, 3L, 3L, 7L, 8L, 8L,
3L, 3L, 3L, 6L, 7L, 6L, 1L, 3L, 6L, 5L), levels = c("-99",
"402", "403", "406", "411", "412", "415", "416", "417"), class = "factor"),
LOC5a = structure(c(5L, 2L, 2L, 7L, 7L, 7L, 6L, 6L, 2L, 2L,
3L, 2L, 2L, 5L, 5L, 2L, 2L, 5L, 2L, 2L, 2L, 2L, 4L, 4L, 4L,
4L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 3L, 2L, 3L, 2L, 2L,
2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L,
4L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 2L, 1L, 2L, 2L, 2L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 3L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 2L,
2L, 5L, 3L, 3L, 5L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L,
2L, 2L, 4L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
4L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 5L, 5L, 5L, 2L, 2L, 2L, 2L,
3L, 4L, 1L), levels = c("-99", "501", "505", "512", "514",
"515", "520"), class = "factor"), LOC5b = structure(c(5L,
4L, 4L, 7L, 7L, 7L, 7L, 7L, 2L, 5L, 6L, 3L, 3L, 5L, 5L, 5L,
5L, 5L, 7L, 7L, 3L, 3L, 4L, 5L, 5L, 7L, 7L, 7L, 3L, 3L, 3L,
2L, 7L, 5L, 5L, 5L, 3L, 5L, 4L, 4L, 6L, 6L, 7L, 1L, 5L, 5L,
7L, 7L, 3L, 2L, 2L, 4L, 4L, 2L, 3L, 6L, 1L, 2L, 5L, 5L, 7L,
7L, 7L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 7L, 5L, 1L, 3L, 4L, 4L,
4L, 6L, 6L, 6L, 5L, 5L, 5L, 5L, 2L, 2L, 2L, 2L, 7L, 7L, 2L,
3L, 3L, 3L, 3L, 6L, 3L, 3L, 2L, 2L, 2L, 6L, 4L, 3L, 7L, 3L,
3L, 3L, 3L, 3L, 4L, 4L, 1L, 7L, 7L, 7L, 7L, 6L, 3L, 7L, 2L,
2L, 2L, 5L, 7L, 6L, 2L, 5L, 5L, 5L, 6L, 2L, 5L, 5L, 1L, 2L,
3L, 2L, 7L, 7L, 7L, 2L, 5L, 6L, 2L, 4L, 7L, 1L), levels = c("-99",
"501", "505", "512", "514", "515", "520"), class = "factor"),
LOC6a = structure(c(9L, 10L, 10L, 6L, 6L, 6L, 3L, 2L, 2L,
2L, 4L, 2L, 2L, 4L, 4L, 4L, 4L, 2L, 7L, 4L, 2L, 3L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 4L, 4L, 4L, 3L, 2L, 2L, 4L, 2L, 2L, 2L,
2L, 5L, 1L, 2L, 2L, 2L, 2L, 8L, 8L, 2L, 3L, 2L, 2L, 2L, 3L,
2L, 3L, 2L, 2L, 1L, 4L, 2L, 4L, 4L, 1L, 10L, 4L, 4L, 4L,
4L, 4L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 4L, 4L, 2L, 2L, 2L, 2L,
4L, 4L, 4L, 2L, 2L, 2L, 4L, 3L, 2L, 2L, 2L, 2L, 10L, 10L,
3L, 7L, 4L, 4L, 1L, 2L, 2L, 7L, 4L, 4L, 4L, 2L, 2L, 2L, 2L,
2L, 4L, 3L, 1L, 3L, 3L, 4L, 8L, 1L, 6L, 2L, 2L, 2L, 3L, 2L,
2L, 2L, 2L, 2L, 7L, 4L, 4L, 4L, 2L, 3L, 2L, 4L, 4L, 4L, 5L,
2L, 3L, 3L, 4L, 2L, 2L), levels = c("-99", "601", "604",
"607", "608", "610", "615", "616", "619", "620"), class = "factor"),
LOC6b = structure(c(11L, 11L, 11L, 11L, 11L, 6L, 3L, 3L,
8L, 4L, 4L, 9L, 9L, 4L, 4L, 4L, 4L, 2L, 11L, 9L, 10L, 4L,
11L, 4L, 4L, 9L, 4L, 11L, 4L, 8L, 8L, 8L, 11L, 11L, 11L,
4L, 10L, 11L, 11L, 11L, 10L, 1L, 2L, 2L, 2L, 11L, 10L, 10L,
4L, 4L, 4L, 9L, 9L, 11L, 5L, 11L, 4L, 4L, 1L, 10L, 4L, 4L,
5L, 1L, 11L, 11L, 11L, 11L, 11L, 11L, 1L, 2L, 2L, 4L, 2L,
2L, 2L, 4L, 4L, 11L, 4L, 4L, 11L, 4L, 11L, 11L, 9L, 9L, 8L,
4L, 10L, 4L, 4L, 4L, 4L, 11L, 11L, 3L, 10L, 11L, 11L, 1L,
2L, 2L, 9L, 10L, 10L, 10L, 10L, 10L, 7L, 7L, 8L, 4L, 9L,
1L, 9L, 7L, 11L, 10L, 1L, 8L, 11L, 11L, 2L, 4L, 4L, 2L, 2L,
2L, 3L, 8L, 9L, 9L, 9L, 5L, 4L, 4L, 10L, 10L, 4L, 10L, 2L,
5L, 5L, 7L, 4L, 4L), levels = c("-99", "601", "604", "607",
"608", "610", "615", "616", "617", "619", "620"), class = "factor"),
LOC7a = structure(c(4L, 3L, 3L, 7L, 7L, 7L, 3L, 2L, 5L, 3L,
5L, 7L, 7L, 7L, 7L, 8L, 8L, 5L, 3L, 5L, 5L, 4L, 4L, 4L, 4L,
4L, 5L, 3L, 7L, 5L, 5L, 5L, 5L, 5L, 5L, 7L, 1L, 3L, 4L, 4L,
4L, 4L, 7L, 7L, 7L, 7L, 6L, 6L, 3L, 4L, 5L, 4L, 4L, 3L, 7L,
5L, 4L, 4L, 3L, 4L, 7L, 7L, 7L, 4L, 4L, 7L, 7L, 7L, 7L, 7L,
5L, 4L, 4L, 3L, 4L, 4L, 4L, 1L, 2L, 5L, 5L, 5L, 2L, 5L, 3L,
1L, 5L, 5L, 5L, 3L, 1L, 8L, 8L, 8L, 8L, 3L, 3L, 4L, 3L, 3L,
3L, 7L, 3L, 3L, 1L, 1L, 1L, 4L, 7L, 7L, 5L, 5L, 4L, 7L, 3L,
3L, 3L, 7L, 3L, 5L, 4L, 4L, 4L, 4L, 7L, 3L, 5L, 7L, 7L, 7L,
3L, 3L, 5L, 5L, 5L, 5L, 5L, 9L, 4L, 4L, 4L, 4L, 5L, 2L, 2L,
3L, 5L, 5L), levels = c("-99", "701", "705", "706", "707",
"709", "711", "713", "714"), class = "factor"), LOC7b = structure(c(5L,
5L, 5L, 5L, 5L, 5L, 8L, 4L, 6L, 5L, 5L, 5L, 5L, 6L, 6L, 8L,
8L, 4L, 4L, 5L, 8L, 5L, 4L, 5L, 5L, 5L, 5L, 5L, 8L, 4L, 6L,
4L, 5L, 5L, 4L, 6L, 1L, 5L, 4L, 4L, 5L, 5L, 5L, 5L, 8L, 8L,
5L, 5L, 4L, 5L, 6L, 4L, 4L, 4L, 7L, 5L, 4L, 4L, 5L, 4L, 5L,
8L, 8L, 4L, 4L, 5L, 5L, 5L, 6L, 6L, 5L, 4L, 4L, 5L, 6L, 6L,
6L, 1L, 4L, 4L, 4L, 4L, 2L, 4L, 5L, 1L, 5L, 5L, 4L, 5L, 1L,
7L, 7L, 7L, 7L, 4L, 4L, 3L, 4L, 4L, 4L, 6L, 2L, 2L, 1L, 1L,
1L, 4L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 2L, 5L, 5L, 3L, 4L, 6L,
6L, 4L, 5L, 8L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L,
5L, 8L, 6L, 6L, 6L, 5L, 5L, 3L, 3L, 5L, 5L, 5L), levels = c("-99",
"705", "706", "707", "711", "713", "714", "718"), class = "factor"),
LOC8a = structure(c(7L, 4L, 4L, 4L, 4L, 4L, 3L, 3L, 4L, 4L,
3L, 7L, 7L, 3L, 3L, 3L, 3L, 3L, 7L, 4L, 8L, 5L, 6L, 6L, 1L,
4L, 5L, 6L, 4L, 3L, 3L, 3L, 7L, 6L, 6L, 8L, 3L, 9L, 6L, 6L,
3L, 3L, 6L, 6L, 9L, 9L, 5L, 5L, 4L, 3L, 4L, 6L, 6L, 3L, 4L,
7L, 5L, 5L, 1L, 3L, 9L, 3L, 3L, 7L, 7L, 9L, 9L, 9L, 3L, 3L,
4L, 1L, 4L, 4L, 3L, 3L, 3L, 4L, 4L, 3L, 9L, 9L, 9L, 4L, 1L,
4L, 8L, 8L, 3L, 4L, 4L, 7L, 7L, 7L, 7L, 6L, 6L, 6L, 6L, 7L,
7L, 9L, 4L, 4L, 8L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 3L, 4L, 8L,
8L, 1L, 4L, 6L, 5L, 9L, 9L, 7L, 4L, 3L, 6L, 4L, 5L, 5L, 5L,
7L, 7L, 4L, 1L, 4L, 3L, 5L, 2L, 8L, 8L, 8L, 6L, 6L, 6L, 6L,
1L, 4L, 7L), levels = c("-99", "802", "807", "808", "813",
"815", "816", "819", "820"), class = "factor"), LOC8b = structure(c(8L,
5L, 5L, 6L, 6L, 6L, 6L, 5L, 6L, 5L, 3L, 7L, 7L, 3L, 3L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 8L, 5L, 1L, 8L, 6L, 6L, 7L, 3L, 3L,
3L, 7L, 7L, 7L, 8L, 6L, 8L, 5L, 5L, 3L, 3L, 7L, 7L, 8L, 8L,
8L, 8L, 5L, 8L, 3L, 7L, 7L, 5L, 7L, 8L, 8L, 8L, 1L, 7L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 8L, 3L, 3L, 7L, 1L, 8L, 6L, 3L, 3L,
3L, 5L, 5L, 2L, 8L, 8L, 8L, 3L, 1L, 6L, 8L, 8L, 7L, 5L, 4L,
8L, 6L, 8L, 8L, 5L, 5L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 6L,
6L, 6L, 8L, 8L, 3L, 6L, 2L, 5L, 7L, 7L, 1L, 5L, 5L, 8L, 8L,
8L, 8L, 5L, 3L, 5L, 7L, 5L, 5L, 5L, 6L, 7L, 6L, 1L, 6L, 7L,
6L, 8L, 8L, 8L, 8L, 8L, 8L, 6L, 6L, 1L, 6L, 8L), levels = c("-99",
"807", "808", "813", "815", "816", "819", "820"), class = "factor"),
LOC9a = structure(c(1L, 6L, 6L, 3L, 3L, 3L, 3L, 3L, 5L, 3L,
3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 2L, 2L,
3L, 3L, 4L, 4L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 3L, 3L, 3L,
3L, 3L, 5L, 5L, 3L, 3L, 3L, 3L, 3L, 3L, 5L, 3L, 3L, 5L, 3L,
3L, 5L, 5L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 3L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,
3L, 4L, 4L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 1L, 3L,
3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 4L, 4L, 2L, 3L, 5L,
5L, 5L, 3L, 5L, 2L, 2L, 2L, 2L, 3L, 3L, 2L, 2L, 3L, 3L, 3L,
3L, 4L, 2L, 2L, 2L, 4L, 3L, 2L, 3L, 3L, 3L, 3L, 5L, 3L, 3L,
3L, 3L, 5L), levels = c("-99", "901", "906", "916", "917",
"919"), class = "factor"), LOC9b = structure(c(1L, 6L, 6L,
4L, 4L, 4L, 4L, 6L, 5L, 6L, 5L, 4L, 4L, 4L, 4L, 3L, 5L, 3L,
5L, 3L, 3L, 6L, 1L, 2L, 2L, 3L, 3L, 6L, 6L, 3L, 3L, 3L, 4L,
6L, 6L, 3L, 4L, 3L, 6L, 6L, 3L, 3L, 6L, 6L, 4L, 4L, 3L, 3L,
3L, 4L, 5L, 4L, 4L, 6L, 3L, 4L, 5L, 5L, 4L, 4L, 3L, 3L, 3L,
4L, 4L, 5L, 5L, 5L, 3L, 3L, 4L, 3L, 3L, 3L, 3L, 1L, 1L, 6L,
6L, 3L, 6L, 6L, 6L, 3L, 3L, 3L, 6L, 6L, 4L, 1L, 1L, 3L, 3L,
3L, 3L, 6L, 3L, 5L, 1L, 6L, 6L, 3L, 3L, 3L, 4L, 2L, 2L, 2L,
4L, 4L, 5L, 5L, 2L, 3L, 5L, 5L, 5L, 4L, 6L, 5L, 3L, 2L, 5L,
6L, 4L, 3L, 3L, 3L, 3L, 3L, 3L, 6L, 4L, 4L, 4L, 5L, 6L, 3L,
3L, 3L, 3L, 3L, 6L, 4L, 4L, 4L, 3L, 6L), levels = c("-99",
"901", "906", "916", "917", "919"), class = "factor"), LOC10a = structure(c(8L,
9L, 9L, 2L, 2L, 2L, 2L, 2L, 9L, 4L, 2L, 2L, 2L, 4L, 4L, 7L,
7L, 2L, 2L, 2L, 2L, 4L, 2L, 5L, 5L, 10L, 8L, 10L, 2L, 6L,
6L, 6L, 6L, 2L, 2L, 2L, 4L, 6L, 4L, 4L, 2L, 2L, 6L, 6L, 2L,
2L, 9L, 9L, 1L, 2L, 9L, 5L, 5L, 6L, 4L, 2L, 1L, 1L, 4L, 2L,
2L, 2L, 2L, 8L, 8L, 9L, 9L, 9L, 9L, 9L, 2L, 6L, 6L, 9L, 10L,
10L, 10L, 4L, 4L, 6L, 2L, 2L, 4L, 4L, 8L, 8L, 2L, 1L, 1L,
12L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 2L, 2L, 2L, 2L, 6L, 4L,
4L, 2L, 11L, 11L, 11L, 2L, 2L, 3L, 3L, 6L, 10L, 5L, 1L, 5L,
2L, 12L, 2L, 3L, 3L, 6L, 2L, 2L, 2L, 4L, 6L, 6L, 6L, 6L,
2L, 2L, 2L, 2L, 2L, 1L, 2L, 8L, 8L, 8L, 4L, 6L, 2L, 2L, 2L,
2L, 2L), levels = c("-99", "1002", "1003", "1004", "1005",
"1009", "1010", "1012", "1014", "1016", "1018", "1020"), class = "factor"),
LOC10b = structure(c(12L, 12L, 12L, 9L, 9L, 9L, 2L, 12L,
10L, 4L, 2L, 10L, 2L, 9L, 9L, 9L, 9L, 4L, 5L, 6L, 10L, 10L,
6L, 10L, 10L, 10L, 10L, 10L, 12L, 6L, 9L, 9L, 10L, 6L, 6L,
6L, 10L, 10L, 4L, 6L, 12L, 12L, 12L, 12L, 4L, 4L, 11L, 11L,
1L, 5L, 10L, 12L, 12L, 10L, 10L, 2L, 1L, 1L, 12L, 4L, 2L,
12L, 12L, 10L, 10L, 10L, 10L, 10L, 9L, 9L, 12L, 11L, 11L,
10L, 12L, 12L, 12L, 6L, 6L, 6L, 10L, 10L, 8L, 8L, 9L, 9L,
10L, 1L, 1L, 12L, 11L, 10L, 10L, 10L, 10L, 6L, 6L, 2L, 5L,
12L, 12L, 9L, 12L, 12L, 4L, 12L, 12L, 12L, 8L, 8L, 12L, 3L,
6L, 12L, 7L, 1L, 7L, 2L, 12L, 6L, 12L, 12L, 10L, 12L, 10L,
10L, 10L, 10L, 10L, 10L, 12L, 5L, 10L, 10L, 10L, 3L, 1L,
10L, 10L, 10L, 10L, 11L, 12L, 4L, 4L, 8L, 2L, 8L), levels = c("-99",
"1002", "1003", "1004", "1005", "1009", "1010", "1012", "1014",
"1016", "1018", "1020"), class = "factor")), row.names = c(NA,
-148L), class = "data.frame")
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