aod: Analysis of Overdispersed Data

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This package provides a set of functions to analyse overdispersed counts or proportions. Most of the methods are already available elsewhere but are scattered in different packages. The proposed functions should be considered as complements to more sophisticated methods such as generalized estimating equations (GEE) or generalized linear mixed effect models (GLMM).

Author
Matthieu Lesnoff <matthieu.lesnoff@cirad.fr> and Renaud Lancelot <renaud.lancelot@cirad.fr>
Date of publication
2012-04-10 07:30:34
Maintainer
Renaud Lancelot <renaud.lancelot@cirad.fr>
License
GPL (>= 2)
Version
1.3
URLs

View on CRAN

Man pages

AIC
Akaike Information Criteria
aic-class
Representation of Objects of Formal Class "aic"
anova.glimML
Likelihood-Ratio Tests for Nested ML Models
antibio
Antibiotics against Shipping Fever in Calves
aod-pkg
Analysis of Overdispersed Data
betabin
Beta-Binomial Model for Proportions
coef
Methods for Function "coef" in Package "aod"
cohorts
Age, Period and Cohort Effects for Vital Rates
deviance
Methods for Function "deviance" in Package "aod"
df.residual
Methods for Function "df.residual" in Package "aod"
dja
Mortality of Djallonke Lambs in Senegal
donner
Test of Proportion Homogeneity using Donner's Adjustment
drs-class
Representation of Objects of Formal Class "drs"
fitted
Methods for Function "fitted" in Package "aod"
glimML-class
Representation of Models of Formal Class "glimML"
glimQL-class
Representation of Models of Formal Class "glimQL"
iccbin
Intra-Cluster Correlation for Binomial Data
iccbin-class
Representation of Objects of Formal Class "iccbin"
invlink
Transformation from the Link Scale to the Observation Scale
link
Transformation from the Observation Scale to the Link Scale
lizards
A Comparison of Site Preferences of Two Species of Lizard
logLik
Methods for Functions "logLik" in Package "aod"
mice
Pregnant Female Mice Experiment
negbin
Negative-Binomial Model for Counts
orob1
Germination Data
orob2
Germination Data
predict
Methods for Function "predict" in Package "aod"
quasibin
Quasi-Likelihood Model for Proportions
quasipois
Quasi-Likelihood Model for Counts
rabbits
Rabbits Foetuses Survival Experiment
raoscott
Test of Proportion Homogeneity using Rao and Scott's...
rats
Rats Diet Experiment
residuals
Residuals for Maximum-Likelihood and Quasi-Likelihood Models
salmonella
Salmonella Reverse Mutagenicity Assay
splitbin
Split Grouped Data Into Individual Data
summary.aic
Akaike Information Statistics
summary.glimML-class
Summary of Objects of Class "summary.glimML"
varbin
Mean, Variance and Confidence Interval of a Proportion
varbin-class
Representation of Objects of Formal Class "varbin"
vcov
Methods for Function "vcov" in Package "aod"
wald.test
Wald Test for Model Coefficients

Files in this package

aod
aod/MD5
aod/R
aod/R/vcov.R
aod/R/varbin.R
aod/R/stat.test.R
aod/R/splitbin.R
aod/R/show-glimML.R
aod/R/residuals.R
aod/R/raoscott.R
aod/R/quasipois.R
aod/R/quasibin.R
aod/R/predict.R
aod/R/negbin.R
aod/R/logLik.R
aod/R/link_invlink.R
aod/R/iccbin.R
aod/R/glimQL_util.R
aod/R/fitted.R
aod/R/donner.R
aod/R/df.residual.R
aod/R/deviance.R
aod/R/coef.R
aod/R/betabin.R
aod/R/anova.glimML.R
aod/R/allClass.R
aod/NEWS
aod/NAMESPACE
aod/man
aod/man/wald.test.Rd
aod/man/vcov.Rd
aod/man/varbin.Rd
aod/man/varbin-class.Rd
aod/man/summary.glimML-class.Rd
aod/man/summary.aic.Rd
aod/man/splitbin.Rd
aod/man/salmonella.Rd
aod/man/residuals.Rd
aod/man/rats.Rd
aod/man/raoscott.Rd
aod/man/rabbits.Rd
aod/man/quasipois.Rd
aod/man/quasibin.Rd
aod/man/predict.Rd
aod/man/orob2.Rd
aod/man/orob1.Rd
aod/man/negbin.Rd
aod/man/mice.Rd
aod/man/logLik.Rd
aod/man/lizards.Rd
aod/man/link.Rd
aod/man/invlink.Rd
aod/man/iccbin.Rd
aod/man/iccbin-class.Rd
aod/man/glimQL-class.Rd
aod/man/glimML-class.Rd
aod/man/fitted.Rd
aod/man/drs-class.Rd
aod/man/donner.Rd
aod/man/dja.Rd
aod/man/df.residual.Rd
aod/man/deviance.Rd
aod/man/cohorts.Rd
aod/man/coef.Rd
aod/man/betabin.Rd
aod/man/aod-pkg.Rd
aod/man/antibio.Rd
aod/man/anova.glimML.Rd
aod/man/AIC.Rd
aod/man/aic-class.Rd
aod/inst
aod/inst/CITATION
aod/DESCRIPTION
aod/data
aod/data/salmonella.rda
aod/data/rats.rda
aod/data/rabbits.rda
aod/data/orob2.rda
aod/data/orob1.rda
aod/data/mice.rda
aod/data/lizards.rda
aod/data/dja.rda
aod/data/cohorts.rda
aod/data/antibio.rda
aod/COPYING