Description Usage Arguments Details Value Author(s) See Also Examples
as.treeshape
is a generic function which converts an tree object into an object of class "treeshape"
. There is currently a single method for this generic function.
1 2 | ## S3 method for class 'phylo'
as.treeshape(x, model, p, ...)
|
x |
An object to be converted into another class. Currently, it must be an object of class |
model |
The model to use when the tree to convert is not binary. If |
p |
The parameter for the model |
... |
Further arguments to be passed to or from other methods. |
as.treeshape
can convert trees that are not binary. When trying to convert a tree with polytomies, this function may either reject the tree (if model=NULL
) or simulate the tree. The polytomy is replaced by a randomized subtree with n tips where n is the size of the polytomy. The subtree is simulated using the PDA, Yule, Aldous or biased model.
An object of class "treeshape"
or an object of classes "treeshape"
and "randomized.treeshape"
if the original tree was not binary.
Michael Blum <michael.blum@imag.fr>
Nicolas Bortolussi <nicolas.bortolussi@imag.fr>
Eric Durand <eric.durand@imag.fr>
Olivier Francois <olivier.francois@imag.fr>
1 2 3 4 5 6 7 8 9 10 |
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