simulate.Tau.X: Simulate (Tau, X_Tau-)

In apTreeshape: Analyses of Phylogenetic Treeshape

Description

Simulates the time before the splitting of the marks into two different fragments, and the size of the fragment at this time.

Usage

simulate.Tau.X(epsilon, x, alpha, beta, n, ab = FALSE, eta = 1, x.ab = 1, lambda = NULL)

Arguments

epsilon	Minimum size of unsampled splits (see appendix 1)
x	Initial fragment size
alpha	Clade age-richness index
beta	Imbalance index
n	Number of marks
ab	Boolean, should the abundances be computed as well? (default to FALSE)
eta	Clade abundance-richness index (if ab)
x.ab	Initial abundance
lambda	Optional, vector of lambda_epsilon returned by the function lambda_N. If set to NULL (the default) it will be computed inside the function

Author(s)

Odile Maliet, Fanny Gascuel & Amaury Lambert

References

Maliet O., Gascuel F., Lambert A. (2018) Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity, bioRxiv 224295, doi: https://doi.org/10.1101/224295

apTreeshape documentation built on Jan. 8, 2021, 2:07 a.m.