get_extinction_list: Gives the tips of the phylogeny in their extinction order

In apTreeshape: Analyses of Phylogenetic Treeshape

Description

Orders the tips which will sequentially get extinct/be sampled, based on relative species abundance as explained in the main text of the article.

Usage

get_extinction_list(N, tree, equal.ab = TRUE)

Arguments

N	Tip nuber
tree	A phylo object
equal.ab	If set to TRUE (the default), all species have the same probability to go extinct first

Author(s)

Odile Maliet, Fanny Gascuel & Amaury Lambert

References

Maliet O., Gascuel F., Lambert A. (2018) Ranked tree shapes, non-random extinctions and the loss of phylogenetic diversity, bioRxiv 224295, doi: https://doi.org/10.1101/224295

apTreeshape documentation built on Jan. 8, 2021, 2:07 a.m.