setRegFiles: Set registration files.

In arf3DS4: Activated Region Fitting, fMRI data analysis (3D).

Description

Link the files necessary for registration to the appropriate slots in the registration object. Registration requires a working copy of FSL. Files must be copied from the FSL directory to the /registration directory of the ARF experiment. By default the standard filenames used by FSL are used.

Usage

setRegFiles(registration, examp2stand = "example_func2standard.mat", 
 examp2high = "example_func2highres.mat", high2stand = "highres2standard.mat", 
 example_func = "example_func.nii.gz", highres = "highres.nii.gz", 
 standard = "standard.nii.gz")

Arguments

registration	Object of class registration to link to.
examp2stand	ARF to standard space affine transformation matrix file.
examp2high	ARF to high resolution affine transformation matrix file.
high2stand	High resolution to standard space affine transformation matrix file.
example_func	Nifti file in ARF native space.
highres	T1 weighted structural image.
standard	Standard space image (MNI152).

Value

Returns a registration object with the appropriate slots filled.

Author(s)

Wouter D. Weeda - [e-mail]

References

See http://www.fmrib.ox.ac.uk/fsl/ on how to obtain FSL and licences.

See Also

registration, createRegs, setRegParams

arf3DS4 documentation built on May 2, 2019, 8:19 a.m.