R/999.DEPRECATED.R

In aroma.cn: Copy-Number Analysis of Large Microarray Data Sets

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# DEPRECATED
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setMethodS3("nbrOfFiles", "AbstractCurveNormalization", function(this, ...) {
  .Deprecated(msg = "nbrOfFiles(x) is deprecated. Use length(getInputDataSet(x)) instead.")
  ds <- getInputDataSet(this)
  length(ds)
}, protected=TRUE)


setMethodS3("nbrOfFiles", "PairedPscbsModel", function(this, ...) {
  .Deprecated(msg = "nbrOfFiles(x) is deprecated. Use length(getTumorDataSet(x)) instead.")
  dsT <- getTumorDataSet(this)
  length(dsT)
})


setMethodS3("nbrOfFiles", "TumorBoostNormalization", function(this, ...) {
  .Deprecated(msg = "nbrOfFiles(x) is deprecated. Use length(getInputDataSet(x)) instead.")
  ds <- getInputDataSet(this)
  length(ds)
})